Hb_001456_060

Information

Type -
Description -
Location Contig1456: 86915-94049
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026812mg
description hypothetical protein
nr
ID KDP30361.1
description hypothetical protein JCGZ_17090 [Jatropha curcas]
swissprot
ID P31521
description 47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1
trembl
ID A0A067K2B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11825: 87324-92183 , PASA_asmbl_11826: 93803-93956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001456_060 0.0 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
2 Hb_009911_030 0.0488549292 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
3 Hb_000339_040 0.048899009 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
4 Hb_004994_010 0.0537956222 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
5 Hb_004052_080 0.053894437 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002876_230 0.0539632309 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
7 Hb_005867_070 0.0595578357 - - DNA binding protein, putative [Ricinus communis]
8 Hb_014834_150 0.0598663761 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_004837_180 0.0601837865 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
10 Hb_002013_020 0.0612668584 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
11 Hb_002217_110 0.0621923879 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
12 Hb_002986_100 0.0623964552 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
13 Hb_000359_040 0.0632583133 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003428_010 0.0643574869 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
15 Hb_001408_140 0.064550939 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
16 Hb_032202_140 0.0671200873 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
17 Hb_003861_060 0.0680708391 - - PREDICTED: treacle protein [Jatropha curcas]
18 Hb_003001_080 0.0688668136 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
19 Hb_002400_340 0.0696316666 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
20 Hb_164390_010 0.0699935355 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]

Gene co-expression network

sample Hb_001456_060 Hb_001456_060 Hb_009911_030 Hb_009911_030 Hb_001456_060--Hb_009911_030 Hb_000339_040 Hb_000339_040 Hb_001456_060--Hb_000339_040 Hb_004994_010 Hb_004994_010 Hb_001456_060--Hb_004994_010 Hb_004052_080 Hb_004052_080 Hb_001456_060--Hb_004052_080 Hb_002876_230 Hb_002876_230 Hb_001456_060--Hb_002876_230 Hb_005867_070 Hb_005867_070 Hb_001456_060--Hb_005867_070 Hb_009911_030--Hb_000339_040 Hb_003428_010 Hb_003428_010 Hb_009911_030--Hb_003428_010 Hb_009911_030--Hb_004052_080 Hb_000172_430 Hb_000172_430 Hb_009911_030--Hb_000172_430 Hb_009911_030--Hb_002876_230 Hb_000339_040--Hb_004052_080 Hb_000339_040--Hb_002876_230 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_000339_040--Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_004994_010--Hb_000339_040 Hb_007007_120 Hb_007007_120 Hb_004052_080--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004052_080--Hb_003513_010 Hb_004052_080--Hb_002876_230 Hb_004052_080--Hb_003428_010 Hb_003861_060 Hb_003861_060 Hb_004052_080--Hb_003861_060 Hb_002876_230--Hb_007007_120 Hb_000331_110 Hb_000331_110 Hb_002876_230--Hb_000331_110 Hb_005867_070--Hb_003861_050 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.87431 10.2597 13.5482 8.17548 9.72133 9.47826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.11938 12.435 8.43447 9.44001 8.69294

CAGE analysis