Hb_001459_020

Information

Type -
Description -
Location Contig1459: 5823-9865
Sequence    

Annotation

kegg
ID tcc:TCM_042913
description Ankyrin repeat-containing protein, putative
nr
ID BAG15869.1
description ankyrin repeat protein [Bruguiera gymnorhiza]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID B1Q4U3
description Ankyrin repeat protein OS=Bruguiera gymnorhiza PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11849: 9214-10060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001459_020 0.0 - - ankyrin repeat protein [Bruguiera gymnorhiza]
2 Hb_002620_040 0.1045508503 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
3 Hb_007718_040 0.1059665985 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
4 Hb_057880_020 0.106691444 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
5 Hb_089305_040 0.1124383829 - - -
6 Hb_000920_340 0.1228260105 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_149345_010 0.125416966 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_008727_060 0.1294682068 - - Beta-glucosidase, putative [Ricinus communis]
9 Hb_000389_170 0.1302724817 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
10 Hb_000462_160 0.1318983463 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_140595_030 0.1346841222 - - -
12 Hb_002764_020 0.1350855447 - - hypothetical protein JCGZ_24084 [Jatropha curcas]
13 Hb_140595_020 0.1380746425 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
14 Hb_080048_030 0.1399272311 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
15 Hb_009004_010 0.1404389166 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
16 Hb_000951_070 0.1412004802 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
17 Hb_005194_050 0.1441264601 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
18 Hb_001295_080 0.1457167206 - - Protein KES1, putative [Ricinus communis]
19 Hb_001186_040 0.1462905865 - - Peroxidase 3 precursor, putative [Ricinus communis]
20 Hb_001104_070 0.1472822909 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]

Gene co-expression network

sample Hb_001459_020 Hb_001459_020 Hb_002620_040 Hb_002620_040 Hb_001459_020--Hb_002620_040 Hb_007718_040 Hb_007718_040 Hb_001459_020--Hb_007718_040 Hb_057880_020 Hb_057880_020 Hb_001459_020--Hb_057880_020 Hb_089305_040 Hb_089305_040 Hb_001459_020--Hb_089305_040 Hb_000920_340 Hb_000920_340 Hb_001459_020--Hb_000920_340 Hb_149345_010 Hb_149345_010 Hb_001459_020--Hb_149345_010 Hb_000462_160 Hb_000462_160 Hb_002620_040--Hb_000462_160 Hb_002620_040--Hb_057880_020 Hb_000139_030 Hb_000139_030 Hb_002620_040--Hb_000139_030 Hb_001295_080 Hb_001295_080 Hb_002620_040--Hb_001295_080 Hb_002188_150 Hb_002188_150 Hb_002620_040--Hb_002188_150 Hb_007718_040--Hb_000920_340 Hb_002764_020 Hb_002764_020 Hb_007718_040--Hb_002764_020 Hb_002445_020 Hb_002445_020 Hb_007718_040--Hb_002445_020 Hb_001104_070 Hb_001104_070 Hb_007718_040--Hb_001104_070 Hb_140595_030 Hb_140595_030 Hb_007718_040--Hb_140595_030 Hb_189208_080 Hb_189208_080 Hb_007718_040--Hb_189208_080 Hb_057880_020--Hb_000462_160 Hb_020367_040 Hb_020367_040 Hb_057880_020--Hb_020367_040 Hb_057880_020--Hb_000139_030 Hb_048755_030 Hb_048755_030 Hb_057880_020--Hb_048755_030 Hb_066293_010 Hb_066293_010 Hb_057880_020--Hb_066293_010 Hb_003796_010 Hb_003796_010 Hb_089305_040--Hb_003796_010 Hb_000951_070 Hb_000951_070 Hb_089305_040--Hb_000951_070 Hb_004643_020 Hb_004643_020 Hb_089305_040--Hb_004643_020 Hb_009393_110 Hb_009393_110 Hb_089305_040--Hb_009393_110 Hb_004951_030 Hb_004951_030 Hb_089305_040--Hb_004951_030 Hb_000920_340--Hb_189208_080 Hb_000920_340--Hb_140595_030 Hb_000920_340--Hb_001104_070 Hb_080048_030 Hb_080048_030 Hb_000920_340--Hb_080048_030 Hb_000920_340--Hb_002445_020 Hb_093388_010 Hb_093388_010 Hb_149345_010--Hb_093388_010 Hb_016734_040 Hb_016734_040 Hb_149345_010--Hb_016734_040 Hb_029510_060 Hb_029510_060 Hb_149345_010--Hb_029510_060 Hb_001542_010 Hb_001542_010 Hb_149345_010--Hb_001542_010 Hb_172486_010 Hb_172486_010 Hb_149345_010--Hb_172486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00968471 0.417477 0.200583 0.706886 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0275501 2.96612

CAGE analysis