Hb_001459_080

Information

Type -
Description -
Location Contig1459: 42812-45071
Sequence    

Annotation

kegg
ID cic:CICLE_v10032980mg
description hypothetical protein
nr
ID XP_006436065.1
description hypothetical protein CICLE_v10032980mg [Citrus clementina]
swissprot
ID Q9AT35
description 60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1
trembl
ID A0A067FK20
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031766mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l23a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11853: 42814-45080 , PASA_asmbl_11854: 43766-44006
cDNA
(Sanger)
(ID:Location)		 045_D09.ab1: 42862-45077

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001459_080 0.0 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
2 Hb_168878_010 0.0461934056 - - 60S ribosomal protein L32A [Hevea brasiliensis]
3 Hb_002374_170 0.0765747069 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
4 Hb_004787_060 0.080648481 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
5 Hb_000025_230 0.0819667055 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
6 Hb_000260_550 0.0981127161 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
7 Hb_028841_030 0.0991719056 - - -
8 Hb_001143_220 0.0997586175 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
9 Hb_005322_040 0.1006319927 - - 60S ribosomal protein L9, putative [Ricinus communis]
10 Hb_008112_040 0.1031929362 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
11 Hb_011381_060 0.1067001785 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
12 Hb_000694_040 0.107926245 - - Uncharacterized protein isoform 1 [Theobroma cacao]
13 Hb_000286_070 0.1086685399 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
14 Hb_000264_210 0.1090835879 - - tfiih, polypeptide, putative [Ricinus communis]
15 Hb_047823_010 0.109478207 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
16 Hb_007154_020 0.1121259285 - - -
17 Hb_001754_250 0.1126521675 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
18 Hb_003185_110 0.116320447 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
19 Hb_003607_150 0.1171007007 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
20 Hb_001776_090 0.117850565 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]

Gene co-expression network

sample Hb_001459_080 Hb_001459_080 Hb_168878_010 Hb_168878_010 Hb_001459_080--Hb_168878_010 Hb_002374_170 Hb_002374_170 Hb_001459_080--Hb_002374_170 Hb_004787_060 Hb_004787_060 Hb_001459_080--Hb_004787_060 Hb_000025_230 Hb_000025_230 Hb_001459_080--Hb_000025_230 Hb_000260_550 Hb_000260_550 Hb_001459_080--Hb_000260_550 Hb_028841_030 Hb_028841_030 Hb_001459_080--Hb_028841_030 Hb_168878_010--Hb_002374_170 Hb_168878_010--Hb_004787_060 Hb_168878_010--Hb_000025_230 Hb_001143_220 Hb_001143_220 Hb_168878_010--Hb_001143_220 Hb_008112_040 Hb_008112_040 Hb_168878_010--Hb_008112_040 Hb_011381_060 Hb_011381_060 Hb_002374_170--Hb_011381_060 Hb_002374_170--Hb_004787_060 Hb_002811_260 Hb_002811_260 Hb_002374_170--Hb_002811_260 Hb_002374_170--Hb_028841_030 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_001329_290 Hb_001329_290 Hb_004787_060--Hb_001329_290 Hb_000286_070 Hb_000286_070 Hb_004787_060--Hb_000286_070 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_004449_170 Hb_004449_170 Hb_004787_060--Hb_004449_170 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010 Hb_003607_150 Hb_003607_150 Hb_000025_230--Hb_003607_150 Hb_000025_230--Hb_008112_040 Hb_000025_230--Hb_002374_170 Hb_000025_230--Hb_011381_060 Hb_000096_170 Hb_000096_170 Hb_000260_550--Hb_000096_170 Hb_007044_130 Hb_007044_130 Hb_000260_550--Hb_007044_130 Hb_004453_170 Hb_004453_170 Hb_000260_550--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_005186_050 Hb_005186_050 Hb_028841_030--Hb_005186_050 Hb_028841_030--Hb_011381_060 Hb_028841_030--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
338.38 108.148 354.206 88.3867 257.165 168.427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
268.491 641.498 169.18 135.699 56.2047

CAGE analysis