Hb_001459_090

Information

Type -
Description -
Location Contig1459: 45766-64043
Sequence    

Annotation

kegg
ID vvi:100255537
description uncharacterized LOC100255537
nr
ID CBI37743.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9C7Q1
description Auxin-responsive protein SAUR66 OS=Arabidopsis thaliana GN=SAUR66 PE=2 SV=1
trembl
ID A0A0E0DWT5
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11855: 60522-60723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001459_090 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_006889_030 0.1293251864 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
3 Hb_000152_710 0.1357122647 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
4 Hb_003929_180 0.1482803947 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
5 Hb_000638_060 0.1494460973 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
6 Hb_006351_020 0.1524266152 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
7 Hb_002641_160 0.1610513319 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001119_070 0.1612421739 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
9 Hb_000327_360 0.1694550315 - - unnamed protein product [Coffea canephora]
10 Hb_002928_020 0.1718267644 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_004223_140 0.1719371818 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
12 Hb_004326_010 0.1729637239 - - cationic amino acid transporter, putative [Ricinus communis]
13 Hb_158092_040 0.1731656592 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
14 Hb_031284_030 0.1733293349 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004522_030 0.173681095 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
16 Hb_000000_480 0.1740509471 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
17 Hb_001216_110 0.1755914502 - - PREDICTED: protein GPR107-like [Jatropha curcas]
18 Hb_021576_070 0.1763681875 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
19 Hb_002687_160 0.1763987395 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
20 Hb_000928_120 0.1764899717 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001459_090 Hb_001459_090 Hb_006889_030 Hb_006889_030 Hb_001459_090--Hb_006889_030 Hb_000152_710 Hb_000152_710 Hb_001459_090--Hb_000152_710 Hb_003929_180 Hb_003929_180 Hb_001459_090--Hb_003929_180 Hb_000638_060 Hb_000638_060 Hb_001459_090--Hb_000638_060 Hb_006351_020 Hb_006351_020 Hb_001459_090--Hb_006351_020 Hb_002641_160 Hb_002641_160 Hb_001459_090--Hb_002641_160 Hb_001119_070 Hb_001119_070 Hb_006889_030--Hb_001119_070 Hb_000098_170 Hb_000098_170 Hb_006889_030--Hb_000098_170 Hb_000049_270 Hb_000049_270 Hb_006889_030--Hb_000049_270 Hb_000236_180 Hb_000236_180 Hb_006889_030--Hb_000236_180 Hb_031284_030 Hb_031284_030 Hb_006889_030--Hb_031284_030 Hb_021576_070 Hb_021576_070 Hb_000152_710--Hb_021576_070 Hb_004109_050 Hb_004109_050 Hb_000152_710--Hb_004109_050 Hb_007537_030 Hb_007537_030 Hb_000152_710--Hb_007537_030 Hb_001545_130 Hb_001545_130 Hb_000152_710--Hb_001545_130 Hb_019280_020 Hb_019280_020 Hb_000152_710--Hb_019280_020 Hb_000494_030 Hb_000494_030 Hb_000152_710--Hb_000494_030 Hb_004032_210 Hb_004032_210 Hb_003929_180--Hb_004032_210 Hb_008725_270 Hb_008725_270 Hb_003929_180--Hb_008725_270 Hb_004223_140 Hb_004223_140 Hb_003929_180--Hb_004223_140 Hb_004218_130 Hb_004218_130 Hb_003929_180--Hb_004218_130 Hb_000012_080 Hb_000012_080 Hb_003929_180--Hb_000012_080 Hb_003929_180--Hb_006351_020 Hb_003847_040 Hb_003847_040 Hb_000638_060--Hb_003847_040 Hb_000283_140 Hb_000283_140 Hb_000638_060--Hb_000283_140 Hb_002217_320 Hb_002217_320 Hb_000638_060--Hb_002217_320 Hb_000570_020 Hb_000570_020 Hb_000638_060--Hb_000570_020 Hb_012807_150 Hb_012807_150 Hb_000638_060--Hb_012807_150 Hb_006120_060 Hb_006120_060 Hb_000638_060--Hb_006120_060 Hb_006351_020--Hb_001119_070 Hb_006351_020--Hb_001545_130 Hb_006351_020--Hb_004223_140 Hb_006351_020--Hb_004032_210 Hb_000152_190 Hb_000152_190 Hb_006351_020--Hb_000152_190 Hb_012760_090 Hb_012760_090 Hb_002641_160--Hb_012760_090 Hb_010050_020 Hb_010050_020 Hb_002641_160--Hb_010050_020 Hb_002641_160--Hb_004218_130 Hb_002641_160--Hb_001545_130 Hb_000309_030 Hb_000309_030 Hb_002641_160--Hb_000309_030 Hb_000000_480 Hb_000000_480 Hb_002641_160--Hb_000000_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0992915 0.657581 1.77985 3.32788 0.587453 0.0790274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.082107 0.258459 0.814706 1.18861 1.36342

CAGE analysis