Hb_001461_010

Information

Type -
Description -
Location Contig1461: 6876-20219
Sequence    

Annotation

kegg
ID pxb:103955966
description trafficking protein particle complex subunit 5
nr
ID XP_009366158.1
description PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
swissprot
ID Q54YG5
description Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1
trembl
ID A0A067KUL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04011 PE=4 SV=1
Gene Ontology
ID GO:0005622
description trafficking protein particle complex subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11876: 6838-20347 , PASA_asmbl_11877: 11222-11684 , PASA_asmbl_11878: 9958-10266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001461_010 0.0 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
2 Hb_004374_140 0.0569475193 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
3 Hb_008544_010 0.0595211964 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
4 Hb_001842_040 0.0682108661 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
5 Hb_010042_010 0.0693456868 - - Urease accessory protein ureD, putative [Ricinus communis]
6 Hb_002631_020 0.07429241 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
7 Hb_000985_060 0.0765506462 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
8 Hb_000441_190 0.0776351447 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
9 Hb_001191_090 0.0787600574 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
10 Hb_000963_180 0.0805810948 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
11 Hb_000479_190 0.0806191387 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000635_150 0.0830565292 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
13 Hb_027625_010 0.0842909504 - - PREDICTED: protein sym-1-like [Jatropha curcas]
14 Hb_114310_080 0.0843305218 - - conserved hypothetical protein [Ricinus communis]
15 Hb_029866_070 0.084645085 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
16 Hb_000122_020 0.0848503783 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
17 Hb_027073_050 0.085363107 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
18 Hb_004449_200 0.0856181081 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
19 Hb_010174_020 0.0864262131 - - protein binding protein, putative [Ricinus communis]
20 Hb_000102_020 0.0875614483 - - hypothetical protein JCGZ_11933 [Jatropha curcas]

Gene co-expression network

sample Hb_001461_010 Hb_001461_010 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_004374_140--Hb_008544_010 Hb_004336_050 Hb_004336_050 Hb_004374_140--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_004374_140--Hb_180301_010 Hb_004374_140--Hb_002631_020 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010 Hb_000172_030 Hb_000172_030 Hb_008544_010--Hb_000172_030 Hb_008544_010--Hb_004336_050 Hb_001191_090 Hb_001191_090 Hb_008544_010--Hb_001191_090 Hb_000046_290 Hb_000046_290 Hb_008544_010--Hb_000046_290 Hb_000441_190 Hb_000441_190 Hb_001842_040--Hb_000441_190 Hb_005278_020 Hb_005278_020 Hb_001842_040--Hb_005278_020 Hb_007100_030 Hb_007100_030 Hb_001842_040--Hb_007100_030 Hb_000283_110 Hb_000283_110 Hb_001842_040--Hb_000283_110 Hb_003893_050 Hb_003893_050 Hb_001842_040--Hb_003893_050 Hb_015807_040 Hb_015807_040 Hb_010042_010--Hb_015807_040 Hb_000331_450 Hb_000331_450 Hb_010042_010--Hb_000331_450 Hb_065525_020 Hb_065525_020 Hb_010042_010--Hb_065525_020 Hb_000934_250 Hb_000934_250 Hb_010042_010--Hb_000934_250 Hb_010042_010--Hb_008544_010 Hb_003018_050 Hb_003018_050 Hb_002631_020--Hb_003018_050 Hb_004449_200 Hb_004449_200 Hb_002631_020--Hb_004449_200 Hb_006452_040 Hb_006452_040 Hb_002631_020--Hb_006452_040 Hb_000122_020 Hb_000122_020 Hb_002631_020--Hb_000122_020 Hb_002631_020--Hb_001191_090 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_000479_190 Hb_000479_190 Hb_000985_060--Hb_000479_190 Hb_114310_080 Hb_114310_080 Hb_000985_060--Hb_114310_080 Hb_000363_360 Hb_000363_360 Hb_000985_060--Hb_000363_360 Hb_028515_010 Hb_028515_010 Hb_000985_060--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_000985_060--Hb_029388_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2233 5.93961 11.3175 26.2803 15.0731 26.6909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9113 50.9434 43.7048 13.9105 13.2904

CAGE analysis