Hb_001461_020

Information

Type -
Description -
Location Contig1461: 9974-12390
Sequence    

Annotation

kegg
ID bvg:104901272
description uncharacterized LOC104901272
nr
ID XP_010687126.1
description PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
swissprot
ID Q52QI2
description Retrotransposon-like protein 1 OS=Bos taurus GN=RTL1 PE=2 SV=2
trembl
ID A5AVY5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042679 PE=4 SV=1
Gene Ontology
ID GO:0043170
description transposon ty3-g gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001461_020 0.0 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
2 Hb_023675_030 0.2108240935 - - -
3 Hb_000003_260 0.2209504403 - - -
4 Hb_085083_020 0.2233817441 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
5 Hb_000236_450 0.2590702673 - - coated vesicle membrane protein, putative [Ricinus communis]
6 Hb_001417_020 0.2615345882 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
7 Hb_000964_070 0.2624702538 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
8 Hb_008123_010 0.2660140291 - - -
9 Hb_000427_080 0.2700144304 - - PREDICTED: uncharacterized protein LOC105775598 [Gossypium raimondii]
10 Hb_003884_040 0.2754006103 - - putative gag-pol polyprotein [Oryza sativa Japonica Group]
11 Hb_003038_150 0.2825976951 - - -
12 Hb_012146_030 0.2876106314 - - -
13 Hb_031658_040 0.2877795237 - - -
14 Hb_003175_110 0.2914494792 - - -
15 Hb_003878_080 0.2925188478 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
16 Hb_001496_080 0.2931665039 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_006618_050 0.2943484731 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
18 Hb_002495_060 0.2957372942 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_016734_030 0.2958703268 - - -
20 Hb_004785_070 0.2962601133 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001461_020 Hb_001461_020 Hb_023675_030 Hb_023675_030 Hb_001461_020--Hb_023675_030 Hb_000003_260 Hb_000003_260 Hb_001461_020--Hb_000003_260 Hb_085083_020 Hb_085083_020 Hb_001461_020--Hb_085083_020 Hb_000236_450 Hb_000236_450 Hb_001461_020--Hb_000236_450 Hb_001417_020 Hb_001417_020 Hb_001461_020--Hb_001417_020 Hb_000964_070 Hb_000964_070 Hb_001461_020--Hb_000964_070 Hb_003038_150 Hb_003038_150 Hb_023675_030--Hb_003038_150 Hb_002249_210 Hb_002249_210 Hb_023675_030--Hb_002249_210 Hb_007313_060 Hb_007313_060 Hb_023675_030--Hb_007313_060 Hb_000703_300 Hb_000703_300 Hb_023675_030--Hb_000703_300 Hb_032733_010 Hb_032733_010 Hb_023675_030--Hb_032733_010 Hb_000086_040 Hb_000086_040 Hb_000003_260--Hb_000086_040 Hb_000329_050 Hb_000329_050 Hb_000003_260--Hb_000329_050 Hb_000427_080 Hb_000427_080 Hb_000003_260--Hb_000427_080 Hb_000116_300 Hb_000116_300 Hb_000003_260--Hb_000116_300 Hb_018202_030 Hb_018202_030 Hb_000003_260--Hb_018202_030 Hb_003175_110 Hb_003175_110 Hb_085083_020--Hb_003175_110 Hb_085083_020--Hb_000964_070 Hb_066487_010 Hb_066487_010 Hb_085083_020--Hb_066487_010 Hb_063943_010 Hb_063943_010 Hb_085083_020--Hb_063943_010 Hb_005523_010 Hb_005523_010 Hb_085083_020--Hb_005523_010 Hb_090530_010 Hb_090530_010 Hb_085083_020--Hb_090530_010 Hb_011616_020 Hb_011616_020 Hb_000236_450--Hb_011616_020 Hb_008123_010 Hb_008123_010 Hb_000236_450--Hb_008123_010 Hb_031658_040 Hb_031658_040 Hb_000236_450--Hb_031658_040 Hb_002518_120 Hb_002518_120 Hb_000236_450--Hb_002518_120 Hb_003805_070 Hb_003805_070 Hb_000236_450--Hb_003805_070 Hb_002368_070 Hb_002368_070 Hb_000236_450--Hb_002368_070 Hb_001417_020--Hb_008123_010 Hb_154141_010 Hb_154141_010 Hb_001417_020--Hb_154141_010 Hb_000599_230 Hb_000599_230 Hb_001417_020--Hb_000599_230 Hb_001417_020--Hb_090530_010 Hb_001417_020--Hb_031658_040 Hb_012165_020 Hb_012165_020 Hb_001417_020--Hb_012165_020 Hb_004984_080 Hb_004984_080 Hb_000964_070--Hb_004984_080 Hb_000941_150 Hb_000941_150 Hb_000964_070--Hb_000941_150 Hb_003211_030 Hb_003211_030 Hb_000964_070--Hb_003211_030 Hb_000676_200 Hb_000676_200 Hb_000964_070--Hb_000676_200 Hb_000964_070--Hb_066487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.36279 0.118918 0.0296602 0.0564696 0.291308 0.00934016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0663435 0.0174005 0.165065 0.13843 0.772656

CAGE analysis