Hb_001462_020

Information

Type -
Description -
Location Contig1462: 4919-8524
Sequence    

Annotation

kegg
ID cic:CICLE_v10033628mg
description hypothetical protein
nr
ID XP_006436321.1
description hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID Q2QS64
description Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g25190 PE=4 SV=1
Gene Ontology
ID GO:0003677
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001462_020 0.0 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
2 Hb_071586_010 0.0010790323 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
3 Hb_096671_010 0.0271661251 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_000904_100 0.0277729754 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
5 Hb_003777_010 0.2319582689 - - -
6 Hb_001956_030 0.2423984565 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
7 Hb_089173_010 0.2476622027 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
8 Hb_005045_040 0.2755308687 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
9 Hb_001221_370 0.2844573839 - - hypothetical protein MIMGU_mgv1a020064mg, partial [Erythranthe guttata]
10 Hb_026048_060 0.30087301 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
11 Hb_125847_010 0.302239366 - - -
12 Hb_000430_010 0.3025852509 - - -
13 Hb_001338_060 0.3034352047 - - -
14 Hb_003025_070 0.3037906934 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
15 Hb_162126_010 0.3040205621 - - -
16 Hb_168311_010 0.3072848515 - - -
17 Hb_005285_010 0.3090626412 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
18 Hb_000139_440 0.3119234368 - - unnamed protein product [Coffea canephora]
19 Hb_000590_020 0.3146296377 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
20 Hb_047040_010 0.3158853122 - - integrase [Gossypium herbaceum]

Gene co-expression network

sample Hb_001462_020 Hb_001462_020 Hb_071586_010 Hb_071586_010 Hb_001462_020--Hb_071586_010 Hb_096671_010 Hb_096671_010 Hb_001462_020--Hb_096671_010 Hb_000904_100 Hb_000904_100 Hb_001462_020--Hb_000904_100 Hb_003777_010 Hb_003777_010 Hb_001462_020--Hb_003777_010 Hb_001956_030 Hb_001956_030 Hb_001462_020--Hb_001956_030 Hb_089173_010 Hb_089173_010 Hb_001462_020--Hb_089173_010 Hb_071586_010--Hb_096671_010 Hb_071586_010--Hb_000904_100 Hb_071586_010--Hb_003777_010 Hb_071586_010--Hb_001956_030 Hb_071586_010--Hb_089173_010 Hb_096671_010--Hb_000904_100 Hb_096671_010--Hb_001956_030 Hb_096671_010--Hb_089173_010 Hb_096671_010--Hb_003777_010 Hb_000904_100--Hb_001956_030 Hb_000904_100--Hb_089173_010 Hb_000904_100--Hb_003777_010 Hb_005045_040 Hb_005045_040 Hb_003777_010--Hb_005045_040 Hb_001338_060 Hb_001338_060 Hb_003777_010--Hb_001338_060 Hb_006478_170 Hb_006478_170 Hb_003777_010--Hb_006478_170 Hb_054362_010 Hb_054362_010 Hb_001956_030--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_001956_030--Hb_127993_010 Hb_169574_010 Hb_169574_010 Hb_001956_030--Hb_169574_010 Hb_001956_030--Hb_089173_010 Hb_048874_010 Hb_048874_010 Hb_001956_030--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_001956_030--Hb_005799_040 Hb_006806_010 Hb_006806_010 Hb_089173_010--Hb_006806_010 Hb_008246_050 Hb_008246_050 Hb_089173_010--Hb_008246_050 Hb_089173_010--Hb_005799_040 Hb_089173_010--Hb_048874_010 Hb_089173_010--Hb_169574_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0109393 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0372842 0.0157011 0

CAGE analysis