Hb_001468_040

Information

Type -
Description -
Location Contig1468: 66445-66876
Sequence    

Annotation

kegg
ID tcc:TCM_024268
description hypothetical protein
nr
ID XP_007028466.1
description Uncharacterized protein TCM_024268 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EWC9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_024268 PE=4 SV=1
Gene Ontology
ID GO:0005488
description cysteine-rich rlk (receptor-like protein kinase) 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001468_040 0.0 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
2 Hb_067472_010 0.0961212195 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
3 Hb_116784_020 0.0973213977 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
4 Hb_000237_170 0.1030126693 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
5 Hb_001366_260 0.1132673615 - - T4.15 [Malus x robusta]
6 Hb_004312_020 0.119651473 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002983_090 0.124329689 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
8 Hb_002615_080 0.1246672397 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
9 Hb_000352_060 0.1258925387 - - RNA-directed DNA polymerase [Arachis hypogaea]
10 Hb_001514_150 0.1264865104 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
11 Hb_001345_040 0.1273751987 - - hypothetical protein VITISV_015004 [Vitis vinifera]
12 Hb_011472_050 0.1359821009 - - -
13 Hb_188075_010 0.1361647269 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
14 Hb_006787_070 0.1378184445 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
15 Hb_005092_090 0.1378690081 - - cold regulated protein [Manihot esculenta]
16 Hb_000820_100 0.1388162738 - - RNA-directed DNA polymerase [Arachis hypogaea]
17 Hb_000027_230 0.1412612435 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_000173_110 0.1413020867 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
19 Hb_006588_020 0.1415976782 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
20 Hb_000732_180 0.1424920833 - - Uncharacterized protein TCM_030007 [Theobroma cacao]

Gene co-expression network

sample Hb_001468_040 Hb_001468_040 Hb_067472_010 Hb_067472_010 Hb_001468_040--Hb_067472_010 Hb_116784_020 Hb_116784_020 Hb_001468_040--Hb_116784_020 Hb_000237_170 Hb_000237_170 Hb_001468_040--Hb_000237_170 Hb_001366_260 Hb_001366_260 Hb_001468_040--Hb_001366_260 Hb_004312_020 Hb_004312_020 Hb_001468_040--Hb_004312_020 Hb_002983_090 Hb_002983_090 Hb_001468_040--Hb_002983_090 Hb_067472_010--Hb_116784_020 Hb_067472_010--Hb_001366_260 Hb_011472_050 Hb_011472_050 Hb_067472_010--Hb_011472_050 Hb_000820_100 Hb_000820_100 Hb_067472_010--Hb_000820_100 Hb_002013_030 Hb_002013_030 Hb_067472_010--Hb_002013_030 Hb_116784_020--Hb_001366_260 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_116784_020--Hb_000820_100 Hb_000753_150 Hb_000753_150 Hb_000237_170--Hb_000753_150 Hb_000103_230 Hb_000103_230 Hb_000237_170--Hb_000103_230 Hb_000237_160 Hb_000237_160 Hb_000237_170--Hb_000237_160 Hb_022693_080 Hb_022693_080 Hb_000237_170--Hb_022693_080 Hb_000237_170--Hb_011472_050 Hb_001366_260--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_001366_260--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_001345_040 Hb_001345_040 Hb_004312_020--Hb_001345_040 Hb_008834_010 Hb_008834_010 Hb_004312_020--Hb_008834_010 Hb_004312_020--Hb_001366_260 Hb_035651_010 Hb_035651_010 Hb_004312_020--Hb_035651_010 Hb_188075_010 Hb_188075_010 Hb_004312_020--Hb_188075_010 Hb_002983_090--Hb_000237_160 Hb_008461_070 Hb_008461_070 Hb_002983_090--Hb_008461_070 Hb_158534_010 Hb_158534_010 Hb_002983_090--Hb_158534_010 Hb_046117_030 Hb_046117_030 Hb_002983_090--Hb_046117_030 Hb_000033_010 Hb_000033_010 Hb_002983_090--Hb_000033_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0731522 1.85104 1.37342 1.38957 0.073943 0.24406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.66316 6.10477

CAGE analysis