Hb_001470_030

Information

Type -
Description -
Location Contig1470: 68107-89891
Sequence    

Annotation

kegg
ID rcu:RCOM_1509980
description zinc finger protein, putative
nr
ID XP_012080027.1
description PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
swissprot
ID Q14149
description MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3
trembl
ID B9RAZ5
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1509980 PE=4 SV=1
Gene Ontology
ID GO:0006355
description morc family cw-type zinc finger protein 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11911: 67987-70805 , PASA_asmbl_11912: 70922-75417 , PASA_asmbl_11913: 74994-75315 , PASA_asmbl_11914: 75750-89856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001470_030 0.0 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
2 Hb_001030_020 0.0530611044 - - Poly(A) polymerase alpha, putative [Ricinus communis]
3 Hb_002078_350 0.0586379053 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
4 Hb_003938_090 0.0608903551 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010423_030 0.0651330797 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
6 Hb_000152_500 0.0651525619 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
7 Hb_000373_070 0.0661306876 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
8 Hb_006831_140 0.0689653423 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_003125_120 0.0692788818 - - PREDICTED: TITAN-like protein [Jatropha curcas]
10 Hb_001163_050 0.0696118841 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
11 Hb_000948_160 0.0698611144 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
12 Hb_189216_020 0.0709012388 - - PREDICTED: translin [Jatropha curcas]
13 Hb_000078_120 0.0713509017 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
14 Hb_014109_040 0.0730151109 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
15 Hb_011386_010 0.0730643716 - - mitochondrial carrier protein, putative [Ricinus communis]
16 Hb_001359_050 0.0733601373 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000331_550 0.0736799916 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
18 Hb_156279_020 0.0747030963 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
19 Hb_019280_050 0.074866432 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
20 Hb_000729_030 0.0758497219 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_001470_030 Hb_001470_030 Hb_001030_020 Hb_001030_020 Hb_001470_030--Hb_001030_020 Hb_002078_350 Hb_002078_350 Hb_001470_030--Hb_002078_350 Hb_003938_090 Hb_003938_090 Hb_001470_030--Hb_003938_090 Hb_010423_030 Hb_010423_030 Hb_001470_030--Hb_010423_030 Hb_000152_500 Hb_000152_500 Hb_001470_030--Hb_000152_500 Hb_000373_070 Hb_000373_070 Hb_001470_030--Hb_000373_070 Hb_001030_020--Hb_010423_030 Hb_027380_050 Hb_027380_050 Hb_001030_020--Hb_027380_050 Hb_001245_100 Hb_001245_100 Hb_001030_020--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_001030_020--Hb_001163_050 Hb_001157_040 Hb_001157_040 Hb_001030_020--Hb_001157_040 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_002078_350--Hb_156279_020 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180 Hb_008847_030 Hb_008847_030 Hb_003938_090--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_003938_090--Hb_007416_340 Hb_003647_140 Hb_003647_140 Hb_003938_090--Hb_003647_140 Hb_000340_180 Hb_000340_180 Hb_003938_090--Hb_000340_180 Hb_002641_060 Hb_002641_060 Hb_003938_090--Hb_002641_060 Hb_001278_100 Hb_001278_100 Hb_010423_030--Hb_001278_100 Hb_001123_060 Hb_001123_060 Hb_010423_030--Hb_001123_060 Hb_089032_030 Hb_089032_030 Hb_010423_030--Hb_089032_030 Hb_012022_040 Hb_012022_040 Hb_010423_030--Hb_012022_040 Hb_003151_040 Hb_003151_040 Hb_000152_500--Hb_003151_040 Hb_000152_500--Hb_000373_070 Hb_001133_120 Hb_001133_120 Hb_000152_500--Hb_001133_120 Hb_006059_050 Hb_006059_050 Hb_000152_500--Hb_006059_050 Hb_000152_500--Hb_027380_050 Hb_000373_070--Hb_003151_040 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_005846_040 Hb_005846_040 Hb_000373_070--Hb_005846_040 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.39509 11.8557 10.6381 9.33558 8.73391 10.7559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8853 18.7899 10.0642 11.5667 11.311

CAGE analysis