Hb_001472_100

Information

Type -
Description -
Location Contig1472: 169643-174381
Sequence    

Annotation

kegg
ID rcu:RCOM_1687380
description ubiquitin-conjugating enzyme h, putative (EC:6.3.2.19)
nr
ID XP_002509830.1
description ubiquitin-conjugating enzyme h, putative [Ricinus communis]
swissprot
ID P42749
description Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2
trembl
ID B9RCE6
description Ubiquitin-conjugating enzyme h, putative OS=Ricinus communis GN=RCOM_1687380 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11928: 169747-174352
cDNA
(Sanger)
(ID:Location)		 022_M17.ab1: 169749-174214 , 027_I18.ab1: 169747-174222

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001472_100 0.0 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
2 Hb_000976_120 0.0582198657 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
3 Hb_002553_060 0.0709288312 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
4 Hb_000110_310 0.0720216379 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
5 Hb_107879_010 0.0723927156 - - phosphoglycerate mutase, putative [Ricinus communis]
6 Hb_000270_680 0.0732512446 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
7 Hb_003207_180 0.0736331379 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
8 Hb_000260_630 0.0747521066 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
9 Hb_000297_160 0.0766502836 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
10 Hb_121729_010 0.076715113 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000579_120 0.0770705082 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
12 Hb_000069_720 0.0778442506 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
13 Hb_008616_050 0.0786015102 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
14 Hb_000599_260 0.0797156026 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
15 Hb_000875_080 0.0801859078 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
16 Hb_006573_190 0.0805590762 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
17 Hb_003878_090 0.0806143981 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
18 Hb_002641_060 0.0809817952 - - prefoldin subunit, putative [Ricinus communis]
19 Hb_002820_050 0.0814404622 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
20 Hb_002946_190 0.0817496079 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001472_100 Hb_001472_100 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_000110_310 Hb_000110_310 Hb_001472_100--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_001472_100--Hb_107879_010 Hb_000270_680 Hb_000270_680 Hb_001472_100--Hb_000270_680 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180 Hb_003878_090 Hb_003878_090 Hb_000976_120--Hb_003878_090 Hb_003647_140 Hb_003647_140 Hb_000976_120--Hb_003647_140 Hb_002641_060 Hb_002641_060 Hb_000976_120--Hb_002641_060 Hb_014834_150 Hb_014834_150 Hb_000976_120--Hb_014834_150 Hb_000579_120 Hb_000579_120 Hb_000976_120--Hb_000579_120 Hb_001946_400 Hb_001946_400 Hb_002553_060--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_002553_060--Hb_001021_150 Hb_001318_280 Hb_001318_280 Hb_002553_060--Hb_001318_280 Hb_008616_050 Hb_008616_050 Hb_002553_060--Hb_008616_050 Hb_002553_060--Hb_000976_120 Hb_189216_020 Hb_189216_020 Hb_002553_060--Hb_189216_020 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_009898_050 Hb_009898_050 Hb_000110_310--Hb_009898_050 Hb_000110_310--Hb_000579_120 Hb_000110_310--Hb_000270_680 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_000227_170 Hb_000227_170 Hb_107879_010--Hb_000227_170 Hb_107879_010--Hb_000270_680 Hb_107879_010--Hb_000579_120 Hb_107879_010--Hb_000110_310 Hb_003513_010 Hb_003513_010 Hb_107879_010--Hb_003513_010 Hb_000007_390 Hb_000007_390 Hb_000270_680--Hb_000007_390 Hb_000297_160 Hb_000297_160 Hb_000270_680--Hb_000297_160 Hb_003943_050 Hb_003943_050 Hb_000270_680--Hb_003943_050 Hb_000260_630 Hb_000260_630 Hb_003207_180--Hb_000260_630 Hb_000300_260 Hb_000300_260 Hb_003207_180--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_003207_180--Hb_003848_040 Hb_000069_720 Hb_000069_720 Hb_003207_180--Hb_000069_720 Hb_000130_270 Hb_000130_270 Hb_003207_180--Hb_000130_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5309 16.7909 52.6112 40.7168 28.2855 29.0354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6124 53.3368 24.5205 32.6634 35.8279

CAGE analysis