Hb_001472_120

Information

Type -
Description -
Location Contig1472: 190294-200356
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11933: 197814-199031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001472_120 0.0 - - -
2 Hb_001279_140 0.0854480463 - - PREDICTED: cystinosin homolog [Jatropha curcas]
3 Hb_000483_360 0.101972679 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
4 Hb_005539_030 0.1052967319 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
5 Hb_000003_480 0.1091780205 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
6 Hb_001936_020 0.1102026178 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
7 Hb_004577_020 0.1118318131 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
8 Hb_005054_290 0.1137217024 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
9 Hb_000260_220 0.115021151 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
10 Hb_010417_080 0.1154173353 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
11 Hb_003159_080 0.1156974058 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
12 Hb_000057_200 0.1184832856 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
13 Hb_012022_030 0.1186554078 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
14 Hb_010931_120 0.1186889481 - - myosin heavy chain-related family protein [Populus trichocarpa]
15 Hb_005215_030 0.1187287183 - - FAD-dependent oxidoreductase family protein [Populus trichocarpa]
16 Hb_000252_170 0.1208878864 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
17 Hb_004223_090 0.1220718046 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
18 Hb_002400_400 0.1237874538 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
19 Hb_006788_020 0.1245222415 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
20 Hb_039946_020 0.1250294583 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001472_120 Hb_001472_120 Hb_001279_140 Hb_001279_140 Hb_001472_120--Hb_001279_140 Hb_000483_360 Hb_000483_360 Hb_001472_120--Hb_000483_360 Hb_005539_030 Hb_005539_030 Hb_001472_120--Hb_005539_030 Hb_000003_480 Hb_000003_480 Hb_001472_120--Hb_000003_480 Hb_001936_020 Hb_001936_020 Hb_001472_120--Hb_001936_020 Hb_004577_020 Hb_004577_020 Hb_001472_120--Hb_004577_020 Hb_001279_140--Hb_000003_480 Hb_000057_200 Hb_000057_200 Hb_001279_140--Hb_000057_200 Hb_000421_210 Hb_000421_210 Hb_001279_140--Hb_000421_210 Hb_000260_220 Hb_000260_220 Hb_001279_140--Hb_000260_220 Hb_000395_080 Hb_000395_080 Hb_001279_140--Hb_000395_080 Hb_003728_030 Hb_003728_030 Hb_000483_360--Hb_003728_030 Hb_000483_360--Hb_005539_030 Hb_000483_360--Hb_001936_020 Hb_000556_020 Hb_000556_020 Hb_000483_360--Hb_000556_020 Hb_005215_030 Hb_005215_030 Hb_000483_360--Hb_005215_030 Hb_000300_280 Hb_000300_280 Hb_000483_360--Hb_000300_280 Hb_000169_010 Hb_000169_010 Hb_005539_030--Hb_000169_010 Hb_004970_110 Hb_004970_110 Hb_005539_030--Hb_004970_110 Hb_004048_070 Hb_004048_070 Hb_005539_030--Hb_004048_070 Hb_000638_080 Hb_000638_080 Hb_005539_030--Hb_000638_080 Hb_007254_040 Hb_007254_040 Hb_005539_030--Hb_007254_040 Hb_000031_220 Hb_000031_220 Hb_000003_480--Hb_000031_220 Hb_000003_480--Hb_000260_220 Hb_005054_290 Hb_005054_290 Hb_000003_480--Hb_005054_290 Hb_003847_080 Hb_003847_080 Hb_000003_480--Hb_003847_080 Hb_002982_040 Hb_002982_040 Hb_000003_480--Hb_002982_040 Hb_106724_020 Hb_106724_020 Hb_000003_480--Hb_106724_020 Hb_003994_240 Hb_003994_240 Hb_001936_020--Hb_003994_240 Hb_001936_020--Hb_004577_020 Hb_004108_140 Hb_004108_140 Hb_001936_020--Hb_004108_140 Hb_011671_430 Hb_011671_430 Hb_001936_020--Hb_011671_430 Hb_000059_210 Hb_000059_210 Hb_001936_020--Hb_000059_210 Hb_004577_020--Hb_011671_430 Hb_010417_080 Hb_010417_080 Hb_004577_020--Hb_010417_080 Hb_000853_350 Hb_000853_350 Hb_004577_020--Hb_000853_350 Hb_000853_170 Hb_000853_170 Hb_004577_020--Hb_000853_170 Hb_003952_070 Hb_003952_070 Hb_004577_020--Hb_003952_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.402 10.1459 2.8957 6.15546 11.0826 14.0041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0881 8.36811 8.39051 16.2329 1.98288

CAGE analysis