Hb_001472_140

Information

Type -
Description -
Location Contig1472: 209735-211159
Sequence    

Annotation

kegg
ID rcu:RCOM_1687090
description potassium channel tetramerization domain-containing protein, putative
nr
ID XP_012086873.1
description PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
swissprot
ID Q9FN67
description BTB/POZ domain-containing protein At5g41330 OS=Arabidopsis thaliana GN=At5g41330 PE=2 SV=1
trembl
ID A0A067JN47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20572 PE=4 SV=1
Gene Ontology
ID GO:0051260
description btb poz domain-containing protein at5g41330

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11934: 209308-209417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001472_140 0.0 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
2 Hb_001329_080 0.0856648975 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
3 Hb_000836_210 0.1060329637 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
4 Hb_004297_080 0.1181609983 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
5 Hb_008406_030 0.1209922751 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
6 Hb_002875_070 0.1288390893 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
7 Hb_005408_080 0.1352179141 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
8 Hb_000336_190 0.1395502349 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
9 Hb_182970_010 0.142267478 - - calmodulin-binding protein 60-D [Populus trichocarpa]
10 Hb_000009_200 0.1427612865 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
11 Hb_005714_100 0.1439007849 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
12 Hb_178658_010 0.1458999616 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
13 Hb_009557_050 0.1467421231 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
14 Hb_003849_190 0.1467755401 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
15 Hb_002233_080 0.1479419137 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
16 Hb_000284_170 0.1488287226 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
17 Hb_002849_110 0.1489864509 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
18 Hb_020967_010 0.1503680423 - - -
19 Hb_002311_110 0.1538364617 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000365_280 0.1553826984 - - calcium binding protein/cast, putative [Ricinus communis]

Gene co-expression network

sample Hb_001472_140 Hb_001472_140 Hb_001329_080 Hb_001329_080 Hb_001472_140--Hb_001329_080 Hb_000836_210 Hb_000836_210 Hb_001472_140--Hb_000836_210 Hb_004297_080 Hb_004297_080 Hb_001472_140--Hb_004297_080 Hb_008406_030 Hb_008406_030 Hb_001472_140--Hb_008406_030 Hb_002875_070 Hb_002875_070 Hb_001472_140--Hb_002875_070 Hb_005408_080 Hb_005408_080 Hb_001472_140--Hb_005408_080 Hb_000009_200 Hb_000009_200 Hb_001329_080--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_001329_080--Hb_005714_100 Hb_007382_100 Hb_007382_100 Hb_001329_080--Hb_007382_100 Hb_182970_010 Hb_182970_010 Hb_001329_080--Hb_182970_010 Hb_056196_060 Hb_056196_060 Hb_001329_080--Hb_056196_060 Hb_002849_110 Hb_002849_110 Hb_000836_210--Hb_002849_110 Hb_000087_100 Hb_000087_100 Hb_000836_210--Hb_000087_100 Hb_178658_010 Hb_178658_010 Hb_000836_210--Hb_178658_010 Hb_001541_160 Hb_001541_160 Hb_000836_210--Hb_001541_160 Hb_002311_110 Hb_002311_110 Hb_000836_210--Hb_002311_110 Hb_004297_080--Hb_008406_030 Hb_000666_120 Hb_000666_120 Hb_004297_080--Hb_000666_120 Hb_002233_080 Hb_002233_080 Hb_004297_080--Hb_002233_080 Hb_000210_160 Hb_000210_160 Hb_004297_080--Hb_000210_160 Hb_001675_310 Hb_001675_310 Hb_004297_080--Hb_001675_310 Hb_004241_200 Hb_004241_200 Hb_008406_030--Hb_004241_200 Hb_009557_050 Hb_009557_050 Hb_008406_030--Hb_009557_050 Hb_001195_650 Hb_001195_650 Hb_008406_030--Hb_001195_650 Hb_027905_010 Hb_027905_010 Hb_008406_030--Hb_027905_010 Hb_002875_070--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_002875_070--Hb_000035_050 Hb_002759_260 Hb_002759_260 Hb_002875_070--Hb_002759_260 Hb_003849_190 Hb_003849_190 Hb_002875_070--Hb_003849_190 Hb_001133_010 Hb_001133_010 Hb_002875_070--Hb_001133_010 Hb_002875_070--Hb_000009_200 Hb_002400_040 Hb_002400_040 Hb_005408_080--Hb_002400_040 Hb_000892_030 Hb_000892_030 Hb_005408_080--Hb_000892_030 Hb_094437_050 Hb_094437_050 Hb_005408_080--Hb_094437_050 Hb_000110_260 Hb_000110_260 Hb_005408_080--Hb_000110_260 Hb_005725_280 Hb_005725_280 Hb_005408_080--Hb_005725_280 Hb_005408_080--Hb_001329_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.8934 67.1975 35.675 73.5822 3.27947 3.57114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00951 4.74448 4.74119 7.44538 13.6584

CAGE analysis