Hb_001473_060

Information

Type -
Description -
Location Contig1473: 60997-63747
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28480g
description POPTRDRAFT_706564; oxidoreductase family protein
nr
ID XP_012092657.1
description PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
swissprot
ID O49561
description Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX8 PE=1 SV=2
trembl
ID A0A067J9A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06417 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 2-beta-dioxygenase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11980: 61331-61478 , PASA_asmbl_11981: 61511-63766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_060 0.0 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
2 Hb_032260_060 0.0627910061 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
3 Hb_004330_040 0.0659324221 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003754_020 0.0733629745 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000714_060 0.0950672275 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
6 Hb_000668_050 0.1009605403 - - phosphoglycerate mutase, putative [Ricinus communis]
7 Hb_093218_010 0.1083618932 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
8 Hb_000951_090 0.116885933 - - Oligopeptide transporter, putative [Ricinus communis]
9 Hb_002276_250 0.1307639999 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
10 Hb_002045_010 0.1320058999 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
11 Hb_002805_180 0.1331392572 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000310_110 0.1331464086 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
13 Hb_001104_020 0.1370489731 - - DNA binding protein, putative [Ricinus communis]
14 Hb_009767_060 0.1384445028 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
15 Hb_004055_090 0.1412075978 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
16 Hb_003189_010 0.1412965386 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
17 Hb_000490_040 0.1419566663 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
18 Hb_007684_010 0.1422937003 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000359_180 0.1426381332 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000749_120 0.1446242791 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001473_060 Hb_001473_060 Hb_032260_060 Hb_032260_060 Hb_001473_060--Hb_032260_060 Hb_004330_040 Hb_004330_040 Hb_001473_060--Hb_004330_040 Hb_003754_020 Hb_003754_020 Hb_001473_060--Hb_003754_020 Hb_000714_060 Hb_000714_060 Hb_001473_060--Hb_000714_060 Hb_000668_050 Hb_000668_050 Hb_001473_060--Hb_000668_050 Hb_093218_010 Hb_093218_010 Hb_001473_060--Hb_093218_010 Hb_032260_060--Hb_004330_040 Hb_032260_060--Hb_003754_020 Hb_032260_060--Hb_093218_010 Hb_032260_060--Hb_000714_060 Hb_000310_110 Hb_000310_110 Hb_032260_060--Hb_000310_110 Hb_004330_040--Hb_003754_020 Hb_005181_170 Hb_005181_170 Hb_004330_040--Hb_005181_170 Hb_004330_040--Hb_000310_110 Hb_002045_010 Hb_002045_010 Hb_004330_040--Hb_002045_010 Hb_004055_090 Hb_004055_090 Hb_003754_020--Hb_004055_090 Hb_002276_250 Hb_002276_250 Hb_003754_020--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_003754_020--Hb_004357_030 Hb_000714_060--Hb_093218_010 Hb_000951_090 Hb_000951_090 Hb_000714_060--Hb_000951_090 Hb_005731_070 Hb_005731_070 Hb_000714_060--Hb_005731_070 Hb_001104_020 Hb_001104_020 Hb_000714_060--Hb_001104_020 Hb_007684_010 Hb_007684_010 Hb_000668_050--Hb_007684_010 Hb_003189_010 Hb_003189_010 Hb_000668_050--Hb_003189_010 Hb_000668_050--Hb_000714_060 Hb_000668_050--Hb_003754_020 Hb_000668_050--Hb_000951_090 Hb_093218_010--Hb_001104_020 Hb_093218_010--Hb_000951_090 Hb_033772_060 Hb_033772_060 Hb_093218_010--Hb_033772_060 Hb_005892_040 Hb_005892_040 Hb_093218_010--Hb_005892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.175786 3.42196 4.56019 0.0137832 0.0298222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.19305 1.48669

CAGE analysis