Hb_001473_090

Information

Type -
Description -
Location Contig1473: 77093-85328
Sequence    

Annotation

kegg
ID rcu:RCOM_1020610
description hypothetical protein
nr
ID XP_012092654.1
description PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
swissprot
ID Q9M2S6
description E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1
trembl
ID A0A067JLF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06415 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring u-box superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11984: 77145-82881 , PASA_asmbl_11985: 82924-85326 , PASA_asmbl_11986: 83982-84165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_090 0.0 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
2 Hb_000209_070 0.0572032193 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
3 Hb_002749_110 0.0633185611 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
4 Hb_001178_150 0.0654859264 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
5 Hb_000347_570 0.0672177483 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
6 Hb_009151_020 0.0685117612 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
7 Hb_000785_040 0.0687279097 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
8 Hb_000935_090 0.068947483 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
9 Hb_003029_130 0.0703139989 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
10 Hb_000329_130 0.0724127939 - - beta-tubulin cofactor d, putative [Ricinus communis]
11 Hb_000160_290 0.0726001635 - - unnamed protein product [Vitis vinifera]
12 Hb_000029_320 0.0729479061 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
13 Hb_003124_130 0.0750910284 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
14 Hb_003847_120 0.0751941253 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_015099_010 0.0754921019 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
16 Hb_010925_020 0.0772044437 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
17 Hb_001417_050 0.0790593864 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
18 Hb_004218_240 0.0804066593 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
19 Hb_003656_180 0.0805391966 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
20 Hb_005731_090 0.0810072767 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]

Gene co-expression network

sample Hb_001473_090 Hb_001473_090 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001178_150 Hb_001178_150 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_022250_110 Hb_022250_110 Hb_000209_070--Hb_022250_110 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_001675_070 Hb_001675_070 Hb_000209_070--Hb_001675_070 Hb_000029_320 Hb_000029_320 Hb_000209_070--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_000209_070--Hb_003464_020 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100 Hb_000935_090 Hb_000935_090 Hb_001178_150--Hb_000935_090 Hb_001178_150--Hb_000347_570 Hb_000796_190 Hb_000796_190 Hb_001178_150--Hb_000796_190 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_000347_570--Hb_009151_020 Hb_020665_030 Hb_020665_030 Hb_000347_570--Hb_020665_030 Hb_000025_650 Hb_000025_650 Hb_000347_570--Hb_000025_650 Hb_001417_050 Hb_001417_050 Hb_000347_570--Hb_001417_050 Hb_009151_020--Hb_020665_030 Hb_000329_130 Hb_000329_130 Hb_009151_020--Hb_000329_130 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_007062_020 Hb_007062_020 Hb_000785_040--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_000785_040--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_000785_040--Hb_003966_030 Hb_027380_140 Hb_027380_140 Hb_000785_040--Hb_027380_140 Hb_001025_080 Hb_001025_080 Hb_000785_040--Hb_001025_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9725 16.5805 12.8515 14.0569 29.6335 35.1461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.98689 7.14333 9.93921 12.9443 14.314

CAGE analysis