Hb_001473_100

Information

Type -
Description -
Location Contig1473: 90120-91404
Sequence    

Annotation

kegg
ID tcc:TCM_020384
description Chalcone and stilbene synthase family protein
nr
ID NP_001295723.1
description chalcone synthase 1 [Jatropha curcas]
swissprot
ID P48387
description Chalcone synthase 2 OS=Camellia sinensis GN=CHS2 PE=2 SV=1
trembl
ID A0A067J9A0
description Chalcone synthase OS=Jatropha curcas GN=JCGZ_06413 PE=2 SV=1
Gene Ontology
ID GO:0016210
description chalcone synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11987: 90022-91649
cDNA
(Sanger)
(ID:Location)		 005_E13.ab1: 90022-90877 , 047_M24.ab1: 90022-90920 , 052_J14.ab1: 90019-90911

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_100 0.0 - - chalcone synthase 1 [Jatropha curcas]
2 Hb_000631_130 0.0669362836 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
3 Hb_025469_040 0.0722138315 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
4 Hb_131864_020 0.093497338 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
5 Hb_004055_080 0.1016206649 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_000038_090 0.1075379661 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
7 Hb_007044_070 0.1120246979 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
8 Hb_007747_030 0.11375417 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
9 Hb_000625_130 0.1168131997 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
10 Hb_003786_060 0.1175913042 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
11 Hb_058526_010 0.1179145503 - - -
12 Hb_000194_080 0.1198854555 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
13 Hb_000933_200 0.1211422126 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
14 Hb_000029_420 0.1263879981 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
15 Hb_148914_010 0.127271847 - - glutathione s-transferase, putative [Ricinus communis]
16 Hb_005653_100 0.1278513781 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
17 Hb_002232_370 0.1302452271 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_111693_010 0.1306674582 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
19 Hb_000407_110 0.133577311 - - ripening-induced ACC oxidase [Carica papaya]
20 Hb_000917_330 0.1347099445 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001473_100 Hb_001473_100 Hb_000631_130 Hb_000631_130 Hb_001473_100--Hb_000631_130 Hb_025469_040 Hb_025469_040 Hb_001473_100--Hb_025469_040 Hb_131864_020 Hb_131864_020 Hb_001473_100--Hb_131864_020 Hb_004055_080 Hb_004055_080 Hb_001473_100--Hb_004055_080 Hb_000038_090 Hb_000038_090 Hb_001473_100--Hb_000038_090 Hb_007044_070 Hb_007044_070 Hb_001473_100--Hb_007044_070 Hb_000631_130--Hb_000038_090 Hb_000631_130--Hb_025469_040 Hb_000631_130--Hb_007044_070 Hb_000933_200 Hb_000933_200 Hb_000631_130--Hb_000933_200 Hb_000631_130--Hb_131864_020 Hb_025469_040--Hb_131864_020 Hb_025469_040--Hb_007044_070 Hb_000625_130 Hb_000625_130 Hb_025469_040--Hb_000625_130 Hb_148914_010 Hb_148914_010 Hb_025469_040--Hb_148914_010 Hb_131864_020--Hb_007044_070 Hb_000815_280 Hb_000815_280 Hb_131864_020--Hb_000815_280 Hb_000589_100 Hb_000589_100 Hb_131864_020--Hb_000589_100 Hb_111693_010 Hb_111693_010 Hb_004055_080--Hb_111693_010 Hb_000220_170 Hb_000220_170 Hb_004055_080--Hb_000220_170 Hb_058526_010 Hb_058526_010 Hb_004055_080--Hb_058526_010 Hb_000029_420 Hb_000029_420 Hb_004055_080--Hb_000029_420 Hb_005653_100 Hb_005653_100 Hb_004055_080--Hb_005653_100 Hb_000038_090--Hb_000933_200 Hb_000327_300 Hb_000327_300 Hb_000038_090--Hb_000327_300 Hb_007747_030 Hb_007747_030 Hb_000038_090--Hb_007747_030 Hb_000407_110 Hb_000407_110 Hb_000038_090--Hb_000407_110 Hb_001936_030 Hb_001936_030 Hb_007044_070--Hb_001936_030 Hb_142522_030 Hb_142522_030 Hb_007044_070--Hb_142522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0411328 96.1434 170.965 114.506 0.0171504 0.051504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21282 0.230278 0.611162 987.882 6.52644

CAGE analysis