Hb_001473_130

Information

Type -
Description -
Location Contig1473: 113807-118923
Sequence    

Annotation

kegg
ID rcu:RCOM_1020470
description monoxygenase, putative
nr
ID XP_012092650.1
description PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
swissprot
ID Q6DF46
description Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial OS=Xenopus tropicalis GN=coq6 PE=2 SV=1
trembl
ID A0A067JLE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06410 PE=4 SV=1
Gene Ontology
ID GO:0016709
description fad nad -binding oxidoreductase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11991: 113853-118944 , PASA_asmbl_11992: 115327-116377
cDNA
(Sanger)
(ID:Location)		 011_B24.ab1: 113857-117252 , 021_E05.ab1: 113858-117138

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_130 0.0 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
2 Hb_002025_320 0.0549725236 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
3 Hb_000983_100 0.0712000309 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
4 Hb_002352_010 0.0718836007 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
5 Hb_002326_030 0.079781564 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
6 Hb_002527_070 0.0826230048 - - axonemal dynein light chain, putative [Ricinus communis]
7 Hb_000427_110 0.0830738628 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
8 Hb_001718_100 0.0849182938 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
9 Hb_000048_050 0.0852108772 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
10 Hb_001427_120 0.0857356145 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
11 Hb_002357_040 0.0880894688 - - latex-abundant protein [Hevea brasiliensis]
12 Hb_005779_100 0.0884608765 - - DNAJ [Theobroma cacao]
13 Hb_001677_110 0.0887657016 - - Protein YIPF1, putative [Ricinus communis]
14 Hb_071736_020 0.0909251074 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
15 Hb_000089_160 0.094091078 - - 60S ribosomal protein L5B [Hevea brasiliensis]
16 Hb_005455_070 0.0978616048 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
17 Hb_023226_090 0.0980265347 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
18 Hb_001396_220 0.0983706041 - - nuclear transport factor, putative [Ricinus communis]
19 Hb_002154_050 0.0983820998 - - RNA binding protein, putative [Ricinus communis]
20 Hb_001981_090 0.0993549581 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]

Gene co-expression network

sample Hb_001473_130 Hb_001473_130 Hb_002025_320 Hb_002025_320 Hb_001473_130--Hb_002025_320 Hb_000983_100 Hb_000983_100 Hb_001473_130--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_001473_130--Hb_002352_010 Hb_002326_030 Hb_002326_030 Hb_001473_130--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_001473_130--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_001473_130--Hb_000427_110 Hb_001427_120 Hb_001427_120 Hb_002025_320--Hb_001427_120 Hb_000152_140 Hb_000152_140 Hb_002025_320--Hb_000152_140 Hb_001718_100 Hb_001718_100 Hb_002025_320--Hb_001718_100 Hb_002025_320--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_002025_320--Hb_000956_010 Hb_007229_060 Hb_007229_060 Hb_000983_100--Hb_007229_060 Hb_000091_090 Hb_000091_090 Hb_000983_100--Hb_000091_090 Hb_026988_020 Hb_026988_020 Hb_000983_100--Hb_026988_020 Hb_000983_100--Hb_002527_070 Hb_002352_010--Hb_002527_070 Hb_002352_010--Hb_000427_110 Hb_001677_110 Hb_001677_110 Hb_002352_010--Hb_001677_110 Hb_002352_010--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002352_010--Hb_012522_030 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_002326_030--Hb_007229_060 Hb_002527_070--Hb_001427_120 Hb_002527_070--Hb_000861_040 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_001191_100 Hb_001191_100 Hb_000427_110--Hb_001191_100 Hb_000427_110--Hb_002326_030 Hb_001606_070 Hb_001606_070 Hb_000427_110--Hb_001606_070 Hb_000427_110--Hb_026988_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.5787 8.91474 7.4185 15.2438 49.5415 101.267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.716 86.8723 120.399 28.0262 6.78245

CAGE analysis