Hb_001474_010

Information

Type -
Description -
Location Contig1474: 11328-17440
Sequence    

Annotation

kegg
ID rcu:RCOM_0185810
description calcium lipid binding protein, putative
nr
ID XP_012093274.1
description PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
swissprot
ID Q7XA06
description Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1
trembl
ID A0A067L7F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20061 PE=4 SV=1
Gene Ontology
ID GO:0005515
description synaptotagmin-3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12016: 11621-13225 , PASA_asmbl_12018: 16674-17523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001474_010 0.0 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
2 Hb_002272_230 0.1549987242 - - sodium/hydrogen exchanger, putative [Ricinus communis]
3 Hb_000473_070 0.1589030209 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
4 Hb_000116_120 0.1647067427 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
5 Hb_025526_080 0.1657875131 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
6 Hb_002301_250 0.1658976738 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
7 Hb_080147_060 0.1671966123 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
8 Hb_188281_050 0.1686984427 - - PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
9 Hb_001493_020 0.1711139861 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
10 Hb_006141_030 0.1738456784 - - -
11 Hb_000173_260 0.1772873112 - - hypothetical protein L484_010046 [Morus notabilis]
12 Hb_000834_040 0.1773925404 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
13 Hb_004041_100 0.1798299873 - - -
14 Hb_153257_010 0.1799913736 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
15 Hb_000085_290 0.1838646866 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
16 Hb_078081_010 0.1846387409 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
17 Hb_003106_230 0.1867333232 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
18 Hb_002811_020 0.1891008836 - - Cysteine synthase [Morus notabilis]
19 Hb_005181_060 0.1891336529 - - ATP-citrate synthase, putative [Ricinus communis]
20 Hb_003086_010 0.1907633322 - - hypothetical protein JCGZ_06093 [Jatropha curcas]

Gene co-expression network

sample Hb_001474_010 Hb_001474_010 Hb_002272_230 Hb_002272_230 Hb_001474_010--Hb_002272_230 Hb_000473_070 Hb_000473_070 Hb_001474_010--Hb_000473_070 Hb_000116_120 Hb_000116_120 Hb_001474_010--Hb_000116_120 Hb_025526_080 Hb_025526_080 Hb_001474_010--Hb_025526_080 Hb_002301_250 Hb_002301_250 Hb_001474_010--Hb_002301_250 Hb_080147_060 Hb_080147_060 Hb_001474_010--Hb_080147_060 Hb_004631_080 Hb_004631_080 Hb_002272_230--Hb_004631_080 Hb_004041_100 Hb_004041_100 Hb_002272_230--Hb_004041_100 Hb_002272_230--Hb_025526_080 Hb_000347_110 Hb_000347_110 Hb_002272_230--Hb_000347_110 Hb_002200_060 Hb_002200_060 Hb_002272_230--Hb_002200_060 Hb_002030_170 Hb_002030_170 Hb_002272_230--Hb_002030_170 Hb_000473_070--Hb_002200_060 Hb_000473_070--Hb_002272_230 Hb_003842_010 Hb_003842_010 Hb_000473_070--Hb_003842_010 Hb_009296_060 Hb_009296_060 Hb_000473_070--Hb_009296_060 Hb_000699_050 Hb_000699_050 Hb_000473_070--Hb_000699_050 Hb_001345_010 Hb_001345_010 Hb_000473_070--Hb_001345_010 Hb_003086_010 Hb_003086_010 Hb_000116_120--Hb_003086_010 Hb_000186_290 Hb_000186_290 Hb_000116_120--Hb_000186_290 Hb_078081_010 Hb_078081_010 Hb_000116_120--Hb_078081_010 Hb_021409_140 Hb_021409_140 Hb_000116_120--Hb_021409_140 Hb_000653_010 Hb_000653_010 Hb_000116_120--Hb_000653_010 Hb_031042_030 Hb_031042_030 Hb_025526_080--Hb_031042_030 Hb_025526_080--Hb_004631_080 Hb_025526_080--Hb_000473_070 Hb_004800_220 Hb_004800_220 Hb_025526_080--Hb_004800_220 Hb_004656_010 Hb_004656_010 Hb_025526_080--Hb_004656_010 Hb_132101_010 Hb_132101_010 Hb_002301_250--Hb_132101_010 Hb_000702_060 Hb_000702_060 Hb_002301_250--Hb_000702_060 Hb_000803_120 Hb_000803_120 Hb_002301_250--Hb_000803_120 Hb_003227_010 Hb_003227_010 Hb_002301_250--Hb_003227_010 Hb_000244_280 Hb_000244_280 Hb_002301_250--Hb_000244_280 Hb_003626_050 Hb_003626_050 Hb_002301_250--Hb_003626_050 Hb_002597_010 Hb_002597_010 Hb_080147_060--Hb_002597_010 Hb_000003_510 Hb_000003_510 Hb_080147_060--Hb_000003_510 Hb_000041_290 Hb_000041_290 Hb_080147_060--Hb_000041_290 Hb_002016_020 Hb_002016_020 Hb_080147_060--Hb_002016_020 Hb_000580_070 Hb_000580_070 Hb_080147_060--Hb_000580_070 Hb_001959_030 Hb_001959_030 Hb_080147_060--Hb_001959_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0388432 0.61762 1.26851 1.34866 0.124513 0.353022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.176532 0.0347255 0.065886 3.65345 0.807739

CAGE analysis