Hb_001474_060

Information

Type transcription factor
Description TF Family: ARF
Location Contig1474: 138472-141883
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03890g
description POPTRDRAFT_765287; hypothetical protein
nr
ID XP_012093265.1
description PREDICTED: auxin response factor 16 [Jatropha curcas]
swissprot
ID Q653H7
description Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1
trembl
ID A0A067LJC0
description Auxin response factor OS=Jatropha curcas GN=JCGZ_20054 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001474_060 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
2 Hb_001257_050 0.1016286144 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
3 Hb_000005_370 0.1113948317 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
4 Hb_010810_060 0.1136531071 - - sterol desaturase, putative [Ricinus communis]
5 Hb_000008_070 0.1196248414 - - kinase, putative [Ricinus communis]
6 Hb_005730_060 0.1314776845 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
7 Hb_019654_180 0.1326489725 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
8 Hb_001699_080 0.137584946 - - unnamed protein product [Coffea canephora]
9 Hb_000031_180 0.1384959511 - - sarcosine oxidase, putative [Ricinus communis]
10 Hb_005295_020 0.1392274336 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
11 Hb_136408_040 0.1396884901 - - PREDICTED: protein NDR1 [Jatropha curcas]
12 Hb_000139_060 0.1416637569 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
13 Hb_003929_240 0.1432421238 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
14 Hb_015807_130 0.1454110707 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
15 Hb_000232_040 0.147029706 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
16 Hb_029879_150 0.1481870382 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
17 Hb_005532_030 0.1506643243 - - DNA binding protein, putative [Ricinus communis]
18 Hb_027472_060 0.1510372442 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
19 Hb_019516_070 0.1538293232 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
20 Hb_000088_140 0.1543130172 - - -

Gene co-expression network

sample Hb_001474_060 Hb_001474_060 Hb_001257_050 Hb_001257_050 Hb_001474_060--Hb_001257_050 Hb_000005_370 Hb_000005_370 Hb_001474_060--Hb_000005_370 Hb_010810_060 Hb_010810_060 Hb_001474_060--Hb_010810_060 Hb_000008_070 Hb_000008_070 Hb_001474_060--Hb_000008_070 Hb_005730_060 Hb_005730_060 Hb_001474_060--Hb_005730_060 Hb_019654_180 Hb_019654_180 Hb_001474_060--Hb_019654_180 Hb_001257_050--Hb_000008_070 Hb_003929_240 Hb_003929_240 Hb_001257_050--Hb_003929_240 Hb_000139_060 Hb_000139_060 Hb_001257_050--Hb_000139_060 Hb_001257_050--Hb_000005_370 Hb_001541_200 Hb_001541_200 Hb_001257_050--Hb_001541_200 Hb_000005_370--Hb_003929_240 Hb_003849_070 Hb_003849_070 Hb_000005_370--Hb_003849_070 Hb_001124_230 Hb_001124_230 Hb_000005_370--Hb_001124_230 Hb_001832_170 Hb_001832_170 Hb_000005_370--Hb_001832_170 Hb_010810_060--Hb_005730_060 Hb_000031_180 Hb_000031_180 Hb_010810_060--Hb_000031_180 Hb_027472_060 Hb_027472_060 Hb_010810_060--Hb_027472_060 Hb_000599_150 Hb_000599_150 Hb_010810_060--Hb_000599_150 Hb_001699_080 Hb_001699_080 Hb_010810_060--Hb_001699_080 Hb_000008_070--Hb_000139_060 Hb_001278_020 Hb_001278_020 Hb_000008_070--Hb_001278_020 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_005730_060--Hb_027472_060 Hb_003835_080 Hb_003835_080 Hb_005730_060--Hb_003835_080 Hb_001538_080 Hb_001538_080 Hb_005730_060--Hb_001538_080 Hb_001159_230 Hb_001159_230 Hb_005730_060--Hb_001159_230 Hb_005730_060--Hb_000031_180 Hb_001729_030 Hb_001729_030 Hb_019654_180--Hb_001729_030 Hb_000190_230 Hb_000190_230 Hb_019654_180--Hb_000190_230 Hb_009838_070 Hb_009838_070 Hb_019654_180--Hb_009838_070 Hb_000951_150 Hb_000951_150 Hb_019654_180--Hb_000951_150 Hb_004032_280 Hb_004032_280 Hb_019654_180--Hb_004032_280 Hb_006831_090 Hb_006831_090 Hb_019654_180--Hb_006831_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120127 0.1834 3.02342 6.10997 0.184577 0.404963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131867 0.0889395 0.0846688 0.200225 7.23695

CAGE analysis