Hb_001476_080

Information

Type -
Description -
Location Contig1476: 55206-58352
Sequence    

Annotation

kegg
ID cic:CICLE_v10009759mg
description hypothetical protein
nr
ID XP_012080320.1
description PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
swissprot
ID Q9AXJ4
description Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2
trembl
ID A0A067KGB8
description Eukaryotic translation initiation factor 5A OS=Jatropha curcas GN=JCGZ_11671 PE=3 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 5a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12034: 55380-58102 , PASA_asmbl_12037: 57204-57401
cDNA
(Sanger)
(ID:Location)		 001_E12.ab1: 55380-57955 , 004_E24.ab1: 55380-57988 , 008_J24.ab1: 55425-57899 , 010_D23.ab1: 55421-57911 , 010_F18.ab1: 55422-57936 , 014_E24.ab1: 55420-57903 , 017_P15.ab1: 55380-57939 , 022_P07.ab1: 55380-57810 , 025_M08.ab1: 55373-57972 , 031_N03.ab1: 55425-57989 , 035_F14.ab1: 55380-57869 , 035_H10.ab1: 55420-57955 , 037_L13.ab1: 55380-57892 , 040_J03.ab1: 55373-58011 , 042_A07.ab1: 55425-57903 , 047_N18.ab1: 55418-58012 , 049_J03.ab1: 55380-57825 , 050_G10.ab1: 55425-57843 , 050_K17.ab1: 55380-57874

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001476_080 0.0 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
2 Hb_000001_060 0.0547179986 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
3 Hb_001616_040 0.0684985214 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
4 Hb_004899_370 0.0728182388 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
5 Hb_000996_140 0.0737670984 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
6 Hb_001863_430 0.0754770906 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
7 Hb_000035_370 0.0759080626 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000920_110 0.0761832978 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
9 Hb_003226_100 0.0766215417 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
10 Hb_001504_110 0.0785241033 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
11 Hb_000005_090 0.0793167575 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
12 Hb_000529_030 0.0801095457 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_001016_030 0.0819234232 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
14 Hb_000982_090 0.0829017845 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
15 Hb_015279_010 0.0841073257 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_004143_150 0.0848236308 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
17 Hb_000479_090 0.084952686 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
18 Hb_000331_470 0.0853428998 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
19 Hb_003787_010 0.0854299431 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
20 Hb_003151_040 0.0855766139 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001476_080 Hb_001476_080 Hb_000001_060 Hb_000001_060 Hb_001476_080--Hb_000001_060 Hb_001616_040 Hb_001616_040 Hb_001476_080--Hb_001616_040 Hb_004899_370 Hb_004899_370 Hb_001476_080--Hb_004899_370 Hb_000996_140 Hb_000996_140 Hb_001476_080--Hb_000996_140 Hb_001863_430 Hb_001863_430 Hb_001476_080--Hb_001863_430 Hb_000035_370 Hb_000035_370 Hb_001476_080--Hb_000035_370 Hb_004143_150 Hb_004143_150 Hb_000001_060--Hb_004143_150 Hb_000001_060--Hb_004899_370 Hb_003151_040 Hb_003151_040 Hb_000001_060--Hb_003151_040 Hb_000005_090 Hb_000005_090 Hb_000001_060--Hb_000005_090 Hb_001766_060 Hb_001766_060 Hb_000001_060--Hb_001766_060 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_010175_040 Hb_010175_040 Hb_001616_040--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001616_040--Hb_003226_100 Hb_004899_370--Hb_004143_150 Hb_023278_020 Hb_023278_020 Hb_004899_370--Hb_023278_020 Hb_004899_370--Hb_003151_040 Hb_004127_020 Hb_004127_020 Hb_004899_370--Hb_004127_020 Hb_009615_070 Hb_009615_070 Hb_004899_370--Hb_009615_070 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_000996_140--Hb_010175_040 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_001016_150 Hb_001016_150 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_002811_170 Hb_002811_170 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140 Hb_000035_370--Hb_000920_110 Hb_000035_370--Hb_002768_030 Hb_000035_370--Hb_000001_060 Hb_006831_130 Hb_006831_130 Hb_000035_370--Hb_006831_130 Hb_000035_370--Hb_026053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
397.226 290.867 372.292 383.022 249.984 454.468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
736.073 1059.08 377.397 272.577 269.689

CAGE analysis