Hb_001476_090

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1476: 66704-71571
Sequence    

Annotation

kegg
ID rcu:RCOM_1622300
description WRKY transcription factor, putative
nr
ID XP_012067716.1
description PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
swissprot
ID Q9ZQ70
description Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1
trembl
ID B9RCY6
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1622300 PE=4 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12038: 66559-66751 , PASA_asmbl_12040: 70339-70479 , PASA_asmbl_12041: 67038-71028 , PASA_asmbl_12042: 67169-71285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001476_090 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
2 Hb_003007_030 0.1083972195 - - -
3 Hb_001496_120 0.1401187819 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
4 Hb_000365_220 0.1463192376 - - protein phosphatase-1, putative [Ricinus communis]
5 Hb_000418_150 0.1465328747 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_005542_010 0.1525787579 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
7 Hb_002888_060 0.154875579 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
8 Hb_000454_150 0.1566760349 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
9 Hb_002888_040 0.1620805163 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
10 Hb_083242_020 0.1626924467 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
11 Hb_012033_010 0.1654598908 - - PREDICTED: histone H1.2-like [Jatropha curcas]
12 Hb_031862_200 0.1668120307 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
13 Hb_027337_030 0.1672067848 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
14 Hb_001689_030 0.1676803182 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
15 Hb_002110_110 0.1697731076 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
16 Hb_025045_010 0.1698219443 - - catalytic, putative [Ricinus communis]
17 Hb_001405_230 0.1719741342 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
18 Hb_000853_050 0.1720464296 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000594_130 0.1722801878 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000116_330 0.1734671475 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]

Gene co-expression network

sample Hb_001476_090 Hb_001476_090 Hb_003007_030 Hb_003007_030 Hb_001476_090--Hb_003007_030 Hb_001496_120 Hb_001496_120 Hb_001476_090--Hb_001496_120 Hb_000365_220 Hb_000365_220 Hb_001476_090--Hb_000365_220 Hb_000418_150 Hb_000418_150 Hb_001476_090--Hb_000418_150 Hb_005542_010 Hb_005542_010 Hb_001476_090--Hb_005542_010 Hb_002888_060 Hb_002888_060 Hb_001476_090--Hb_002888_060 Hb_001689_030 Hb_001689_030 Hb_003007_030--Hb_001689_030 Hb_083242_020 Hb_083242_020 Hb_003007_030--Hb_083242_020 Hb_003007_030--Hb_000418_150 Hb_000816_160 Hb_000816_160 Hb_003007_030--Hb_000816_160 Hb_003177_090 Hb_003177_090 Hb_003007_030--Hb_003177_090 Hb_000221_180 Hb_000221_180 Hb_001496_120--Hb_000221_180 Hb_001496_120--Hb_000418_150 Hb_073973_020 Hb_073973_020 Hb_001496_120--Hb_073973_020 Hb_001307_200 Hb_001307_200 Hb_001496_120--Hb_001307_200 Hb_000438_020 Hb_000438_020 Hb_001496_120--Hb_000438_020 Hb_001496_120--Hb_002888_060 Hb_008494_090 Hb_008494_090 Hb_000365_220--Hb_008494_090 Hb_000522_010 Hb_000522_010 Hb_000365_220--Hb_000522_010 Hb_000417_410 Hb_000417_410 Hb_000365_220--Hb_000417_410 Hb_002888_040 Hb_002888_040 Hb_000365_220--Hb_002888_040 Hb_003517_100 Hb_003517_100 Hb_000365_220--Hb_003517_100 Hb_004525_020 Hb_004525_020 Hb_000365_220--Hb_004525_020 Hb_000418_150--Hb_000438_020 Hb_000757_020 Hb_000757_020 Hb_000418_150--Hb_000757_020 Hb_004864_020 Hb_004864_020 Hb_000418_150--Hb_004864_020 Hb_000418_150--Hb_003177_090 Hb_002099_060 Hb_002099_060 Hb_000418_150--Hb_002099_060 Hb_010565_030 Hb_010565_030 Hb_005542_010--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_005542_010--Hb_011472_050 Hb_002110_110 Hb_002110_110 Hb_005542_010--Hb_002110_110 Hb_011609_210 Hb_011609_210 Hb_005542_010--Hb_011609_210 Hb_000173_110 Hb_000173_110 Hb_005542_010--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_005542_010--Hb_009434_060 Hb_001677_230 Hb_001677_230 Hb_002888_060--Hb_001677_230 Hb_001141_040 Hb_001141_040 Hb_002888_060--Hb_001141_040 Hb_000191_100 Hb_000191_100 Hb_002888_060--Hb_000191_100 Hb_001963_110 Hb_001963_110 Hb_002888_060--Hb_001963_110 Hb_001268_300 Hb_001268_300 Hb_002888_060--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.595589 9.28712 8.73625 3.40108 0.961992 1.74351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0596344 0.0782066 0.118988 8.47301 15.3534

CAGE analysis