Hb_001476_100

Information

Type -
Description -
Location Contig1476: 72577-77751
Sequence    

Annotation

kegg
ID rcu:RCOM_1622310
description hypothetical protein
nr
ID XP_002512135.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCY7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1622310 PE=4 SV=1
Gene Ontology
ID GO:0010359
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12044: 73301-73827 , PASA_asmbl_12045: 74951-75767 , PASA_asmbl_12046: 76292-77678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001476_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001017_090 0.0789595174 - - -
3 Hb_002067_160 0.0918540226 - - Protein MLO, putative [Ricinus communis]
4 Hb_000696_110 0.0935589462 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
5 Hb_006602_020 0.0965946231 - - unknown [Medicago truncatula]
6 Hb_000700_090 0.0968540767 - - protein with unknown function [Ricinus communis]
7 Hb_000057_060 0.0983204856 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
8 Hb_010174_120 0.0986856508 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
9 Hb_000387_080 0.1008156186 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
10 Hb_002506_010 0.1013306614 - - choline transporter-related family protein [Populus trichocarpa]
11 Hb_000538_210 0.1035775249 - - ATP binding protein, putative [Ricinus communis]
12 Hb_010174_130 0.1037405274 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
13 Hb_005488_100 0.1061831054 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
14 Hb_009510_030 0.1063887976 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
15 Hb_000258_430 0.1071888154 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_026048_090 0.1077383455 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002391_110 0.1082007378 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
18 Hb_127979_010 0.1092296115 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
19 Hb_035524_030 0.109314091 - - conserved hypothetical protein [Ricinus communis]
20 Hb_162275_010 0.1097387856 - - -

Gene co-expression network

sample Hb_001476_100 Hb_001476_100 Hb_001017_090 Hb_001017_090 Hb_001476_100--Hb_001017_090 Hb_002067_160 Hb_002067_160 Hb_001476_100--Hb_002067_160 Hb_000696_110 Hb_000696_110 Hb_001476_100--Hb_000696_110 Hb_006602_020 Hb_006602_020 Hb_001476_100--Hb_006602_020 Hb_000700_090 Hb_000700_090 Hb_001476_100--Hb_000700_090 Hb_000057_060 Hb_000057_060 Hb_001476_100--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_001017_090--Hb_002506_010 Hb_009510_030 Hb_009510_030 Hb_001017_090--Hb_009510_030 Hb_010931_100 Hb_010931_100 Hb_001017_090--Hb_010931_100 Hb_000264_190 Hb_000264_190 Hb_001017_090--Hb_000264_190 Hb_000258_430 Hb_000258_430 Hb_001017_090--Hb_000258_430 Hb_000085_340 Hb_000085_340 Hb_002067_160--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_002067_160--Hb_005488_100 Hb_004738_090 Hb_004738_090 Hb_002067_160--Hb_004738_090 Hb_007178_010 Hb_007178_010 Hb_002067_160--Hb_007178_010 Hb_026048_090 Hb_026048_090 Hb_002067_160--Hb_026048_090 Hb_002232_180 Hb_002232_180 Hb_002067_160--Hb_002232_180 Hb_000152_140 Hb_000152_140 Hb_000696_110--Hb_000152_140 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040 Hb_006602_020--Hb_000700_090 Hb_006602_010 Hb_006602_010 Hb_006602_020--Hb_006602_010 Hb_005539_290 Hb_005539_290 Hb_006602_020--Hb_005539_290 Hb_000387_080 Hb_000387_080 Hb_006602_020--Hb_000387_080 Hb_005779_100 Hb_005779_100 Hb_006602_020--Hb_005779_100 Hb_001902_050 Hb_001902_050 Hb_006602_020--Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000700_090--Hb_000696_110 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_000057_060--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_127979_010 Hb_127979_010 Hb_000057_060--Hb_127979_010 Hb_000057_060--Hb_002506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.853 1.08702 0.961565 3.58917 15.6002 29.7038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4489 12.2224 20.5249 4.51648 1.71855

CAGE analysis