Hb_001476_130

Information

Type -
Description -
Location Contig1476: 114473-120999
Sequence    

Annotation

kegg
ID rcu:RCOM_0837910
description zinc finger protein, putative
nr
ID XP_012067714.1
description PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
swissprot
ID Q9C533
description Probable protein S-acyltransferase 22 OS=Arabidopsis thaliana GN=PAT22 PE=2 SV=2
trembl
ID B9S925
description S-acyltransferase OS=Ricinus communis GN=RCOM_0837910 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12047: 117668-118905 , PASA_asmbl_12048: 114670-120987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001476_130 0.0 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
2 Hb_002871_130 0.1412137589 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
3 Hb_000120_300 0.1435708471 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
4 Hb_000483_080 0.1442136195 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
5 Hb_002918_120 0.1570196118 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_003674_020 0.1574594446 - - PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
7 Hb_000077_110 0.1591821507 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
8 Hb_093458_020 0.1593039834 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
9 Hb_000307_220 0.1628468998 - - oxidoreductase family protein [Populus trichocarpa]
10 Hb_000406_090 0.165224741 - - unknown [Populus trichocarpa]
11 Hb_008695_150 0.1657871538 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
12 Hb_004446_060 0.1675131523 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_005993_030 0.1712126299 - - putative senescence-associated protein SAG102 [Populus trichocarpa]
14 Hb_005485_070 0.1713362413 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
15 Hb_000803_120 0.1725834584 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
16 Hb_011485_030 0.17343342 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
17 Hb_001195_740 0.1740350648 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
18 Hb_002284_260 0.1752129006 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
19 Hb_005144_060 0.1754673347 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
20 Hb_001832_140 0.1757883642 - - endomembrane protein 70 family protein [Medicago truncatula]

Gene co-expression network

sample Hb_001476_130 Hb_001476_130 Hb_002871_130 Hb_002871_130 Hb_001476_130--Hb_002871_130 Hb_000120_300 Hb_000120_300 Hb_001476_130--Hb_000120_300 Hb_000483_080 Hb_000483_080 Hb_001476_130--Hb_000483_080 Hb_002918_120 Hb_002918_120 Hb_001476_130--Hb_002918_120 Hb_003674_020 Hb_003674_020 Hb_001476_130--Hb_003674_020 Hb_000077_110 Hb_000077_110 Hb_001476_130--Hb_000077_110 Hb_004007_130 Hb_004007_130 Hb_002871_130--Hb_004007_130 Hb_004531_080 Hb_004531_080 Hb_002871_130--Hb_004531_080 Hb_011861_040 Hb_011861_040 Hb_002871_130--Hb_011861_040 Hb_002284_260 Hb_002284_260 Hb_002871_130--Hb_002284_260 Hb_093458_020 Hb_093458_020 Hb_002871_130--Hb_093458_020 Hb_002871_130--Hb_000483_080 Hb_001123_310 Hb_001123_310 Hb_000120_300--Hb_001123_310 Hb_000120_300--Hb_000483_080 Hb_021346_050 Hb_021346_050 Hb_000120_300--Hb_021346_050 Hb_000207_350 Hb_000207_350 Hb_000120_300--Hb_000207_350 Hb_000088_240 Hb_000088_240 Hb_000120_300--Hb_000088_240 Hb_010868_040 Hb_010868_040 Hb_000120_300--Hb_010868_040 Hb_000483_080--Hb_001123_310 Hb_000483_080--Hb_000077_110 Hb_000483_080--Hb_004531_080 Hb_000483_080--Hb_002284_260 Hb_004446_060 Hb_004446_060 Hb_002918_120--Hb_004446_060 Hb_001195_740 Hb_001195_740 Hb_002918_120--Hb_001195_740 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_005144_060 Hb_005144_060 Hb_002918_120--Hb_005144_060 Hb_001437_260 Hb_001437_260 Hb_002918_120--Hb_001437_260 Hb_021346_020 Hb_021346_020 Hb_002918_120--Hb_021346_020 Hb_007590_110 Hb_007590_110 Hb_003674_020--Hb_007590_110 Hb_129996_010 Hb_129996_010 Hb_003674_020--Hb_129996_010 Hb_004846_080 Hb_004846_080 Hb_003674_020--Hb_004846_080 Hb_000696_030 Hb_000696_030 Hb_003674_020--Hb_000696_030 Hb_001782_100 Hb_001782_100 Hb_003674_020--Hb_001782_100 Hb_000307_220 Hb_000307_220 Hb_000077_110--Hb_000307_220 Hb_000566_130 Hb_000566_130 Hb_000077_110--Hb_000566_130 Hb_000077_110--Hb_093458_020 Hb_004920_050 Hb_004920_050 Hb_000077_110--Hb_004920_050 Hb_000077_110--Hb_002284_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38554 3.07657 28.1639 15.5659 2.38641 1.45245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.880674 0.69302 0.404264 18.368 7.74013

CAGE analysis