Hb_001477_050

Information

Type transcription factor
Description TF Family: NAC
Location Contig1477: 41343-43284
Sequence    

Annotation

kegg
ID rcu:RCOM_1172140
description transcription factor, putative
nr
ID XP_002517849.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O49459
description NAC domain-containing protein 73 OS=Arabidopsis thaliana GN=NAC073 PE=2 SV=1
trembl
ID B9RVT0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1172140 PE=4 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12058: 41189-43588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001477_050 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_005056_040 0.0424220845 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
3 Hb_000836_640 0.0442628669 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
4 Hb_024074_030 0.0561935645 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
5 Hb_000037_150 0.0570483421 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
6 Hb_002750_030 0.0574008754 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
7 Hb_000162_010 0.0654437259 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
8 Hb_011912_010 0.0659936688 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_001500_090 0.0682368382 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002660_180 0.0696747807 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001307_180 0.0718469476 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
12 Hb_000776_090 0.0765468288 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
13 Hb_000413_030 0.0805795786 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
14 Hb_000696_130 0.081216414 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_050514_030 0.0816590855 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
16 Hb_006634_120 0.0823734356 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
17 Hb_004846_110 0.0863456124 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
18 Hb_010488_050 0.086383778 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
19 Hb_010288_010 0.0866391066 - - Beta-glucosidase, putative [Ricinus communis]
20 Hb_000173_140 0.0890859846 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]

Gene co-expression network

sample Hb_001477_050 Hb_001477_050 Hb_005056_040 Hb_005056_040 Hb_001477_050--Hb_005056_040 Hb_000836_640 Hb_000836_640 Hb_001477_050--Hb_000836_640 Hb_024074_030 Hb_024074_030 Hb_001477_050--Hb_024074_030 Hb_000037_150 Hb_000037_150 Hb_001477_050--Hb_000037_150 Hb_002750_030 Hb_002750_030 Hb_001477_050--Hb_002750_030 Hb_000162_010 Hb_000162_010 Hb_001477_050--Hb_000162_010 Hb_005056_040--Hb_002750_030 Hb_005056_040--Hb_000037_150 Hb_005056_040--Hb_000836_640 Hb_005056_040--Hb_024074_030 Hb_001500_090 Hb_001500_090 Hb_005056_040--Hb_001500_090 Hb_000776_090 Hb_000776_090 Hb_000836_640--Hb_000776_090 Hb_000836_640--Hb_002750_030 Hb_000836_640--Hb_000162_010 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_005523_030 Hb_005523_030 Hb_000836_640--Hb_005523_030 Hb_002660_180 Hb_002660_180 Hb_024074_030--Hb_002660_180 Hb_024074_030--Hb_000037_150 Hb_000696_130 Hb_000696_130 Hb_024074_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_024074_030--Hb_002636_170 Hb_024074_030--Hb_001307_180 Hb_011912_010 Hb_011912_010 Hb_000037_150--Hb_011912_010 Hb_000037_150--Hb_002660_180 Hb_004846_110 Hb_004846_110 Hb_000037_150--Hb_004846_110 Hb_000037_150--Hb_000696_130 Hb_002750_030--Hb_000162_010 Hb_002750_030--Hb_001500_090 Hb_064047_020 Hb_064047_020 Hb_002750_030--Hb_064047_020 Hb_000162_010--Hb_000776_090 Hb_000162_010--Hb_005056_040 Hb_002276_120 Hb_002276_120 Hb_000162_010--Hb_002276_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.69363 1.18545 48.2168 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.427187 25.5694

CAGE analysis