Hb_001477_060

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1477: 46438-48537
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04840g
description zinc finger family protein
nr
ID XP_006372765.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q9FFH3
description Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1
trembl
ID U5FMI7
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0017s04840g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein magpie-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12061: 48046-48157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001477_060 0.0 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
2 Hb_124677_090 0.0622178812 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009222_040 0.0802919617 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
4 Hb_007357_010 0.0830491403 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001638_340 0.0867991374 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008895_020 0.0973621813 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
7 Hb_161103_010 0.1006202003 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_039946_060 0.1064791092 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
9 Hb_001427_100 0.1100279344 - - acc synthase, putative [Ricinus communis]
10 Hb_000020_210 0.1130746431 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
11 Hb_054926_010 0.1133510171 - - glutamate receptor 2 plant, putative [Ricinus communis]
12 Hb_007221_040 0.1166655693 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
13 Hb_007632_230 0.1178027673 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
14 Hb_002053_190 0.1305949408 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
15 Hb_001715_060 0.1318007229 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
16 Hb_006651_030 0.131939313 - - unnamed protein product [Homo sapiens]
17 Hb_008406_060 0.1327851706 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
18 Hb_001794_040 0.1330957832 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
19 Hb_001022_070 0.1341242028 - - cell wall invertase [Manihot esculenta]
20 Hb_001277_370 0.1342419707 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]

Gene co-expression network

sample Hb_001477_060 Hb_001477_060 Hb_124677_090 Hb_124677_090 Hb_001477_060--Hb_124677_090 Hb_009222_040 Hb_009222_040 Hb_001477_060--Hb_009222_040 Hb_007357_010 Hb_007357_010 Hb_001477_060--Hb_007357_010 Hb_001638_340 Hb_001638_340 Hb_001477_060--Hb_001638_340 Hb_008895_020 Hb_008895_020 Hb_001477_060--Hb_008895_020 Hb_161103_010 Hb_161103_010 Hb_001477_060--Hb_161103_010 Hb_124677_090--Hb_008895_020 Hb_124677_090--Hb_007357_010 Hb_124677_090--Hb_001638_340 Hb_054926_010 Hb_054926_010 Hb_124677_090--Hb_054926_010 Hb_001715_060 Hb_001715_060 Hb_124677_090--Hb_001715_060 Hb_000020_210 Hb_000020_210 Hb_009222_040--Hb_000020_210 Hb_001405_170 Hb_001405_170 Hb_009222_040--Hb_001405_170 Hb_002053_190 Hb_002053_190 Hb_009222_040--Hb_002053_190 Hb_002890_330 Hb_002890_330 Hb_009222_040--Hb_002890_330 Hb_001427_100 Hb_001427_100 Hb_009222_040--Hb_001427_100 Hb_001277_370 Hb_001277_370 Hb_007357_010--Hb_001277_370 Hb_007357_010--Hb_001715_060 Hb_007632_230 Hb_007632_230 Hb_007357_010--Hb_007632_230 Hb_001221_070 Hb_001221_070 Hb_007357_010--Hb_001221_070 Hb_011574_020 Hb_011574_020 Hb_001638_340--Hb_011574_020 Hb_001638_340--Hb_008895_020 Hb_000012_350 Hb_000012_350 Hb_001638_340--Hb_000012_350 Hb_059275_010 Hb_059275_010 Hb_001638_340--Hb_059275_010 Hb_006651_030 Hb_006651_030 Hb_008895_020--Hb_006651_030 Hb_029977_030 Hb_029977_030 Hb_008895_020--Hb_029977_030 Hb_008895_020--Hb_059275_010 Hb_008406_060 Hb_008406_060 Hb_161103_010--Hb_008406_060 Hb_011909_050 Hb_011909_050 Hb_161103_010--Hb_011909_050 Hb_161103_010--Hb_006651_030 Hb_161103_010--Hb_007357_010 Hb_000928_280 Hb_000928_280 Hb_161103_010--Hb_000928_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0165106 2.02244 2.57289 3.97515 0 0.0116459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0569832 1.9442

CAGE analysis