Hb_001477_070

Information

Type -
Description -
Location Contig1477: 54089-59196
Sequence    

Annotation

kegg
ID rcu:RCOM_1171880
description hypothetical protein
nr
ID XP_002517843.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVS4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1171880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12062: 54140-54406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001477_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000084_030 0.1059245482 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008695_090 0.1064650772 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
4 Hb_000407_040 0.1093396716 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
5 Hb_008103_110 0.11203231 - - ATP binding protein, putative [Ricinus communis]
6 Hb_002681_060 0.1139026783 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
7 Hb_014361_150 0.1156626743 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
8 Hb_004635_030 0.1163713026 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
9 Hb_185516_010 0.1217622489 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
10 Hb_001377_360 0.123858925 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
11 Hb_000010_240 0.1260028969 - - Protein bem46, putative [Ricinus communis]
12 Hb_011930_110 0.1292796647 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
13 Hb_000059_340 0.1308346316 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
14 Hb_004597_010 0.1329987165 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
15 Hb_004109_040 0.1332095608 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
16 Hb_006346_040 0.1336839883 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
17 Hb_000081_010 0.1342009617 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
18 Hb_029799_010 0.1343461988 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_000983_090 0.1370375813 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
20 Hb_002411_030 0.1378721933 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001477_070 Hb_001477_070 Hb_000084_030 Hb_000084_030 Hb_001477_070--Hb_000084_030 Hb_008695_090 Hb_008695_090 Hb_001477_070--Hb_008695_090 Hb_000407_040 Hb_000407_040 Hb_001477_070--Hb_000407_040 Hb_008103_110 Hb_008103_110 Hb_001477_070--Hb_008103_110 Hb_002681_060 Hb_002681_060 Hb_001477_070--Hb_002681_060 Hb_014361_150 Hb_014361_150 Hb_001477_070--Hb_014361_150 Hb_002411_030 Hb_002411_030 Hb_000084_030--Hb_002411_030 Hb_006346_040 Hb_006346_040 Hb_000084_030--Hb_006346_040 Hb_003411_110 Hb_003411_110 Hb_000084_030--Hb_003411_110 Hb_003299_030 Hb_003299_030 Hb_000084_030--Hb_003299_030 Hb_000457_050 Hb_000457_050 Hb_000084_030--Hb_000457_050 Hb_004943_030 Hb_004943_030 Hb_008695_090--Hb_004943_030 Hb_000375_290 Hb_000375_290 Hb_008695_090--Hb_000375_290 Hb_003682_030 Hb_003682_030 Hb_008695_090--Hb_003682_030 Hb_000723_110 Hb_000723_110 Hb_008695_090--Hb_000723_110 Hb_001754_030 Hb_001754_030 Hb_008695_090--Hb_001754_030 Hb_000169_080 Hb_000169_080 Hb_008695_090--Hb_000169_080 Hb_000407_040--Hb_002681_060 Hb_000010_240 Hb_000010_240 Hb_000407_040--Hb_000010_240 Hb_000059_340 Hb_000059_340 Hb_000407_040--Hb_000059_340 Hb_000061_470 Hb_000061_470 Hb_000407_040--Hb_000061_470 Hb_000407_040--Hb_008103_110 Hb_000886_050 Hb_000886_050 Hb_008103_110--Hb_000886_050 Hb_000878_070 Hb_000878_070 Hb_008103_110--Hb_000878_070 Hb_001225_030 Hb_001225_030 Hb_008103_110--Hb_001225_030 Hb_000803_070 Hb_000803_070 Hb_008103_110--Hb_000803_070 Hb_006588_210 Hb_006588_210 Hb_008103_110--Hb_006588_210 Hb_005137_050 Hb_005137_050 Hb_008103_110--Hb_005137_050 Hb_000130_380 Hb_000130_380 Hb_002681_060--Hb_000130_380 Hb_002681_060--Hb_000061_470 Hb_002681_060--Hb_000059_340 Hb_002681_060--Hb_000010_240 Hb_000260_440 Hb_000260_440 Hb_014361_150--Hb_000260_440 Hb_002379_050 Hb_002379_050 Hb_014361_150--Hb_002379_050 Hb_004357_020 Hb_004357_020 Hb_014361_150--Hb_004357_020 Hb_000760_020 Hb_000760_020 Hb_014361_150--Hb_000760_020 Hb_000125_200 Hb_000125_200 Hb_014361_150--Hb_000125_200 Hb_005306_160 Hb_005306_160 Hb_014361_150--Hb_005306_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.9826 14.6292 11.5272 4.55147 5.69882 7.14684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.05188 4.37691 7.88087 2.78268 1.53073

CAGE analysis