Hb_001477_080

Information

Type -
Description -
Location Contig1477: 59971-60426
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04860g
description hypothetical protein
nr
ID XP_006372767.1
description hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
swissprot
ID Q9SGP6
description Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1
trembl
ID B9MYC1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s04860g PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin-c9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 042_I21.ab1: 59938-60516 , 048_E03.ab1: 59828-60518

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001477_080 0.0 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
2 Hb_000529_050 0.0694226766 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
3 Hb_004242_160 0.0794743625 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
4 Hb_000313_190 0.080885403 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
5 Hb_002922_010 0.0890512703 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
6 Hb_004586_120 0.0899245542 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
7 Hb_000322_020 0.0933733614 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
8 Hb_025477_020 0.098542705 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
9 Hb_011287_020 0.0997028455 - - ATP binding protein, putative [Ricinus communis]
10 Hb_032260_100 0.1030841885 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
11 Hb_010417_120 0.1056221652 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001511_270 0.107402602 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
13 Hb_000347_360 0.1075616126 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
14 Hb_073870_020 0.1077260437 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
15 Hb_009189_010 0.1125751574 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
16 Hb_001289_030 0.1127584034 - - syntaxin, plant, putative [Ricinus communis]
17 Hb_116349_090 0.1131937665 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
18 Hb_000221_280 0.1141478757 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
19 Hb_002849_030 0.1148506453 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
20 Hb_019654_010 0.1151690269 - - multicopper oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001477_080 Hb_001477_080 Hb_000529_050 Hb_000529_050 Hb_001477_080--Hb_000529_050 Hb_004242_160 Hb_004242_160 Hb_001477_080--Hb_004242_160 Hb_000313_190 Hb_000313_190 Hb_001477_080--Hb_000313_190 Hb_002922_010 Hb_002922_010 Hb_001477_080--Hb_002922_010 Hb_004586_120 Hb_004586_120 Hb_001477_080--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_001477_080--Hb_000322_020 Hb_000529_050--Hb_000313_190 Hb_000221_280 Hb_000221_280 Hb_000529_050--Hb_000221_280 Hb_000529_050--Hb_004586_120 Hb_000529_050--Hb_000322_020 Hb_032260_100 Hb_032260_100 Hb_000529_050--Hb_032260_100 Hb_010417_120 Hb_010417_120 Hb_004242_160--Hb_010417_120 Hb_001511_270 Hb_001511_270 Hb_004242_160--Hb_001511_270 Hb_001098_020 Hb_001098_020 Hb_004242_160--Hb_001098_020 Hb_004242_160--Hb_000529_050 Hb_004242_160--Hb_000313_190 Hb_000313_190--Hb_000221_280 Hb_000731_020 Hb_000731_020 Hb_000313_190--Hb_000731_020 Hb_003071_040 Hb_003071_040 Hb_000313_190--Hb_003071_040 Hb_025477_020 Hb_025477_020 Hb_002922_010--Hb_025477_020 Hb_002922_010--Hb_010417_120 Hb_041534_010 Hb_041534_010 Hb_002922_010--Hb_041534_010 Hb_125201_010 Hb_125201_010 Hb_002922_010--Hb_125201_010 Hb_003582_020 Hb_003582_020 Hb_002922_010--Hb_003582_020 Hb_004586_120--Hb_000322_020 Hb_001257_040 Hb_001257_040 Hb_004586_120--Hb_001257_040 Hb_004586_120--Hb_125201_010 Hb_000422_050 Hb_000422_050 Hb_004586_120--Hb_000422_050 Hb_005618_020 Hb_005618_020 Hb_004586_120--Hb_005618_020 Hb_000322_020--Hb_000422_050 Hb_002849_030 Hb_002849_030 Hb_000322_020--Hb_002849_030 Hb_000322_020--Hb_001257_040 Hb_000347_360 Hb_000347_360 Hb_000322_020--Hb_000347_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.89283 2326 463.009 608.382 0.255604 1.39812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.07775 28.3345 3.27104 47.2228 84.6782

CAGE analysis