Hb_001477_110

Information

Type -
Description -
Location Contig1477: 81376-84780
Sequence    

Annotation

kegg
ID rcu:RCOM_1171660
description prohibitin, putative
nr
ID XP_002517841.1
description prohibitin, putative [Ricinus communis]
swissprot
ID O49460
description Prohibitin-1, mitochondrial OS=Arabidopsis thaliana GN=PHB1 PE=1 SV=1
trembl
ID B9RVS2
description Prohibitin, putative OS=Ricinus communis GN=RCOM_1171660 PE=4 SV=1
Gene Ontology
ID GO:0016020
description prohibitin- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12066: 81464-85877 , PASA_asmbl_12067: 82913-83220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001477_110 0.0 - - prohibitin, putative [Ricinus communis]
2 Hb_001824_070 0.0503476789 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
3 Hb_000380_190 0.0539713244 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
4 Hb_002311_350 0.0615603045 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
5 Hb_001235_210 0.0660783977 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000832_140 0.0663645418 - - actin depolymerizing factor 4 [Hevea brasiliensis]
7 Hb_000007_100 0.0688717142 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
8 Hb_002097_110 0.0724863827 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000174_090 0.0736421969 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
10 Hb_000580_080 0.0743794522 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
11 Hb_000928_240 0.0757031923 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
12 Hb_023732_070 0.0767839428 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
13 Hb_003878_190 0.0784728106 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
14 Hb_005618_140 0.0788809182 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
15 Hb_000465_060 0.0797185875 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
16 Hb_010436_070 0.0797334842 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
17 Hb_000926_250 0.0803444987 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
18 Hb_009711_030 0.0804195237 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
19 Hb_000318_380 0.0807356054 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
20 Hb_000189_620 0.0809645264 - - hypothetical protein JCGZ_23450 [Jatropha curcas]

Gene co-expression network

sample Hb_001477_110 Hb_001477_110 Hb_001824_070 Hb_001824_070 Hb_001477_110--Hb_001824_070 Hb_000380_190 Hb_000380_190 Hb_001477_110--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001477_110--Hb_002311_350 Hb_001235_210 Hb_001235_210 Hb_001477_110--Hb_001235_210 Hb_000832_140 Hb_000832_140 Hb_001477_110--Hb_000832_140 Hb_000007_100 Hb_000007_100 Hb_001477_110--Hb_000007_100 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_000371_080 Hb_000371_080 Hb_001824_070--Hb_000371_080 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060 Hb_000380_190--Hb_002311_350 Hb_000380_190--Hb_000007_100 Hb_000227_230 Hb_000227_230 Hb_000380_190--Hb_000227_230 Hb_000085_320 Hb_000085_320 Hb_000380_190--Hb_000085_320 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070 Hb_004645_050 Hb_004645_050 Hb_002311_350--Hb_004645_050 Hb_000189_270 Hb_000189_270 Hb_002311_350--Hb_000189_270 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_002311_350--Hb_001824_070 Hb_001235_210--Hb_004645_050 Hb_000580_080 Hb_000580_080 Hb_001235_210--Hb_000580_080 Hb_001235_210--Hb_002311_350 Hb_001235_210--Hb_001824_070 Hb_001235_210--Hb_000380_190 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_002214_040 Hb_002214_040 Hb_000832_140--Hb_002214_040 Hb_003050_080 Hb_003050_080 Hb_000832_140--Hb_003050_080 Hb_000103_560 Hb_000103_560 Hb_000832_140--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_000832_140--Hb_063716_050 Hb_000529_190 Hb_000529_190 Hb_000832_140--Hb_000529_190 Hb_000926_300 Hb_000926_300 Hb_000007_100--Hb_000926_300 Hb_000926_250 Hb_000926_250 Hb_000007_100--Hb_000926_250 Hb_002284_240 Hb_002284_240 Hb_000007_100--Hb_002284_240 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_003599_040 Hb_003599_040 Hb_000007_100--Hb_003599_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.449 15.471 14.6658 22.4647 55.2447 72.8889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.4328 101.058 46.0675 36.345 13.1556

CAGE analysis