Hb_001477_130

Information

Type -
Description -
Location Contig1477: 97264-98127
Sequence    

Annotation

kegg
ID rcu:RCOM_1171530
description hypothetical protein
nr
ID XP_012088197.1
description PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12068: 97164-100502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001477_130 0.0 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
2 Hb_004223_280 0.0651779763 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
3 Hb_002685_170 0.0758288229 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
4 Hb_002137_020 0.0785466786 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_011828_020 0.081193664 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
6 Hb_000720_120 0.0817848385 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
7 Hb_005357_030 0.0839219677 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
8 Hb_012022_030 0.0846711626 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
9 Hb_000877_060 0.0854775571 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
10 Hb_000613_140 0.0872105553 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
11 Hb_007590_050 0.0874941589 - - NudC domain-containing protein, putative [Ricinus communis]
12 Hb_002374_160 0.0877408127 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
13 Hb_000205_160 0.0879948085 - - Peroxisome biogenesis protein 12 [Morus notabilis]
14 Hb_004223_090 0.0884484105 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
15 Hb_001048_020 0.08933147 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
16 Hb_000510_130 0.0900252254 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
17 Hb_000109_160 0.0918615957 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
18 Hb_000156_130 0.0924322358 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
19 Hb_000395_080 0.0924833571 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
20 Hb_000571_120 0.0933691052 - - importin beta-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001477_130 Hb_001477_130 Hb_004223_280 Hb_004223_280 Hb_001477_130--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_001477_130--Hb_002685_170 Hb_002137_020 Hb_002137_020 Hb_001477_130--Hb_002137_020 Hb_011828_020 Hb_011828_020 Hb_001477_130--Hb_011828_020 Hb_000720_120 Hb_000720_120 Hb_001477_130--Hb_000720_120 Hb_005357_030 Hb_005357_030 Hb_001477_130--Hb_005357_030 Hb_004223_280--Hb_002137_020 Hb_004223_280--Hb_005357_030 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_004491_010 Hb_004491_010 Hb_002685_170--Hb_004491_010 Hb_002685_170--Hb_005357_030 Hb_007590_050 Hb_007590_050 Hb_002685_170--Hb_007590_050 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_003126_080 Hb_003126_080 Hb_002685_170--Hb_003126_080 Hb_007441_230 Hb_007441_230 Hb_002137_020--Hb_007441_230 Hb_000571_120 Hb_000571_120 Hb_002137_020--Hb_000571_120 Hb_012022_030 Hb_012022_030 Hb_002137_020--Hb_012022_030 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002016_110 Hb_002016_110 Hb_002137_020--Hb_002016_110 Hb_000395_080 Hb_000395_080 Hb_011828_020--Hb_000395_080 Hb_000877_060 Hb_000877_060 Hb_011828_020--Hb_000877_060 Hb_003020_230 Hb_003020_230 Hb_011828_020--Hb_003020_230 Hb_011828_020--Hb_000613_140 Hb_000923_050 Hb_000923_050 Hb_011828_020--Hb_000923_050 Hb_000169_010 Hb_000169_010 Hb_000720_120--Hb_000169_010 Hb_001138_050 Hb_001138_050 Hb_000720_120--Hb_001138_050 Hb_003392_040 Hb_003392_040 Hb_000720_120--Hb_003392_040 Hb_000720_120--Hb_000613_140 Hb_000638_080 Hb_000638_080 Hb_000720_120--Hb_000638_080 Hb_000032_570 Hb_000032_570 Hb_000720_120--Hb_000032_570 Hb_005357_030--Hb_007590_050 Hb_005357_030--Hb_001138_050 Hb_019253_020 Hb_019253_020 Hb_005357_030--Hb_019253_020 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.838 109.585 36.6662 44.448 93.7079 171.971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
187.179 179.241 104.664 94.1413 29.4906

CAGE analysis