Hb_001478_010

Information

Type -
Description -
Location Contig1478: 6545-8434
Sequence    

Annotation

kegg
ID rcu:RCOM_1508610
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012079974.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
swissprot
ID Q9STK5
description Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1
trembl
ID A0A067KGQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11400 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12078: 6877-7302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001478_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
2 Hb_001716_040 0.0652394662 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
3 Hb_002686_090 0.0745102346 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
4 Hb_000635_060 0.074948865 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
5 Hb_000640_040 0.0760412058 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
6 Hb_001975_150 0.0775861691 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
7 Hb_000805_100 0.0812065676 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_004218_180 0.0844802654 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
9 Hb_000504_180 0.0849476031 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
10 Hb_001157_240 0.0885569868 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
11 Hb_008948_020 0.0910938675 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
12 Hb_003943_110 0.0913639914 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
13 Hb_004435_030 0.0922391744 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
14 Hb_000482_040 0.0925046669 - - Protein YME1, putative [Ricinus communis]
15 Hb_027073_020 0.092606659 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
16 Hb_001723_060 0.0948880874 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
17 Hb_001789_110 0.095828705 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_011537_060 0.0965327839 - - UPF0061 protein azo1574 [Morus notabilis]
19 Hb_000789_200 0.0978730708 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
20 Hb_000186_050 0.0988189696 - - PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]

Gene co-expression network

sample Hb_001478_010 Hb_001478_010 Hb_001716_040 Hb_001716_040 Hb_001478_010--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_001478_010--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_001478_010--Hb_000635_060 Hb_000640_040 Hb_000640_040 Hb_001478_010--Hb_000640_040 Hb_001975_150 Hb_001975_150 Hb_001478_010--Hb_001975_150 Hb_000805_100 Hb_000805_100 Hb_001478_010--Hb_000805_100 Hb_001716_040--Hb_000640_040 Hb_005582_040 Hb_005582_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_002686_090--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_002686_090--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_002686_090--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_002686_090--Hb_000170_130 Hb_002539_070 Hb_002539_070 Hb_000635_060--Hb_002539_070 Hb_000635_060--Hb_001716_040 Hb_000635_060--Hb_002686_090 Hb_000482_040 Hb_000482_040 Hb_000635_060--Hb_000482_040 Hb_000635_060--Hb_000504_180 Hb_000640_040--Hb_002542_110 Hb_000640_040--Hb_005582_040 Hb_001157_240 Hb_001157_240 Hb_000640_040--Hb_001157_240 Hb_010068_080 Hb_010068_080 Hb_000640_040--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_000640_040--Hb_001304_110 Hb_011537_060 Hb_011537_060 Hb_001975_150--Hb_011537_060 Hb_001975_150--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_001975_150--Hb_000185_220 Hb_004218_180 Hb_004218_180 Hb_001975_150--Hb_004218_180 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070 Hb_000805_100--Hb_003943_110 Hb_000805_100--Hb_001716_040 Hb_000567_230 Hb_000567_230 Hb_000805_100--Hb_000567_230 Hb_006913_020 Hb_006913_020 Hb_000805_100--Hb_006913_020 Hb_009296_070 Hb_009296_070 Hb_000805_100--Hb_009296_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6113 5.20055 3.66633 4.5041 2.03092 2.55573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22066 4.48187 4.47555 6.35344 9.17623

CAGE analysis