Hb_001478_020

Information

Type desease resistance
Description Gene Name: AAA
Location Contig1478: 9225-14042
Sequence    

Annotation

kegg
ID rcu:RCOM_1508630
description thyroid hormone receptor interactor, putative (EC:3.6.4.3)
nr
ID XP_002511315.1
description thyroid hormone receptor interactor, putative [Ricinus communis]
swissprot
ID Q8H1F9
description Pachytene checkpoint protein 2 homolog OS=Arabidopsis thaliana GN=At4g24710 PE=2 SV=1
trembl
ID B9RAU0
description Thyroid hormone receptor interactor, putative OS=Ricinus communis GN=RCOM_1508630 PE=3 SV=1
Gene Ontology
ID GO:0005524
description pachytene checkpoint protein 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12081: 8986-14103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001478_020 0.0 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
2 Hb_010180_030 0.0625657074 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
3 Hb_001501_070 0.0767781452 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
4 Hb_038044_010 0.1067219866 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
5 Hb_001780_080 0.1092010225 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
6 Hb_003784_040 0.1096376444 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
7 Hb_029510_130 0.1123833496 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
8 Hb_002007_040 0.114252552 - - unnamed protein product [Coffea canephora]
9 Hb_005725_150 0.1180729171 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
10 Hb_000365_210 0.1284564135 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
11 Hb_011360_130 0.1356303325 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002007_280 0.1384364117 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
13 Hb_005504_040 0.1389463935 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000051_080 0.1446176724 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
15 Hb_000139_280 0.144701164 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
16 Hb_001584_360 0.1490167188 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
17 Hb_000288_090 0.1526834675 - - unnamed protein product [Vitis vinifera]
18 Hb_000500_340 0.1535825035 - - PREDICTED: exonuclease 1 [Jatropha curcas]
19 Hb_014497_070 0.1550220129 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
20 Hb_003095_100 0.1615036767 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001478_020 Hb_001478_020 Hb_010180_030 Hb_010180_030 Hb_001478_020--Hb_010180_030 Hb_001501_070 Hb_001501_070 Hb_001478_020--Hb_001501_070 Hb_038044_010 Hb_038044_010 Hb_001478_020--Hb_038044_010 Hb_001780_080 Hb_001780_080 Hb_001478_020--Hb_001780_080 Hb_003784_040 Hb_003784_040 Hb_001478_020--Hb_003784_040 Hb_029510_130 Hb_029510_130 Hb_001478_020--Hb_029510_130 Hb_010180_030--Hb_003784_040 Hb_010180_030--Hb_001501_070 Hb_010180_030--Hb_001780_080 Hb_005725_150 Hb_005725_150 Hb_010180_030--Hb_005725_150 Hb_005504_040 Hb_005504_040 Hb_010180_030--Hb_005504_040 Hb_001501_070--Hb_038044_010 Hb_000365_210 Hb_000365_210 Hb_001501_070--Hb_000365_210 Hb_001501_070--Hb_029510_130 Hb_024973_020 Hb_024973_020 Hb_001501_070--Hb_024973_020 Hb_038044_010--Hb_029510_130 Hb_007545_110 Hb_007545_110 Hb_038044_010--Hb_007545_110 Hb_038044_010--Hb_024973_020 Hb_002942_120 Hb_002942_120 Hb_038044_010--Hb_002942_120 Hb_001780_080--Hb_003784_040 Hb_001780_080--Hb_001501_070 Hb_000139_280 Hb_000139_280 Hb_001780_080--Hb_000139_280 Hb_001780_080--Hb_000365_210 Hb_003784_040--Hb_005504_040 Hb_003784_040--Hb_000139_280 Hb_003784_040--Hb_005725_150 Hb_029510_130--Hb_010180_030 Hb_002007_280 Hb_002007_280 Hb_029510_130--Hb_002007_280 Hb_029510_130--Hb_024973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.497239 0.445887 10.9124 3.28497 0.0888077 0.10332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.481966 0.649983 0.811359 1.104 0.903172

CAGE analysis