Hb_001481_060

Information

Type -
Description -
Location Contig1481: 65857-79393
Sequence    

Annotation

kegg
ID rcu:RCOM_0005420
description hypothetical protein
nr
ID XP_012070038.1
description PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
swissprot
ID Q84JU6
description E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana GN=HOS1 PE=1 SV=1
trembl
ID A0A067KUT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03438 PE=4 SV=1
Gene Ontology
ID GO:0016706
description e3 ubiquitin-protein ligase hos1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12102: 65935-67566 , PASA_asmbl_12103: 68188-70259 , PASA_asmbl_12104: 70896-75460 , PASA_asmbl_12105: 73298-73543 , PASA_asmbl_12106: 75791-76989 , PASA_asmbl_12107: 77516-79346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_060 0.0 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
2 Hb_001716_020 0.0465009725 - - hydrolase, putative [Ricinus communis]
3 Hb_007248_030 0.0473060792 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
4 Hb_002492_010 0.0513735423 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
5 Hb_000345_160 0.0518788599 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
6 Hb_033312_040 0.0527673839 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
7 Hb_004037_020 0.0575139321 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
8 Hb_005730_040 0.0598947422 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
9 Hb_002989_020 0.0615247965 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
10 Hb_002110_080 0.0624372581 - - FH interacting protein 1 [Theobroma cacao]
11 Hb_003498_080 0.0626648202 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
12 Hb_105105_010 0.0641750797 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
13 Hb_002071_070 0.0648265135 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
14 Hb_002849_130 0.0653081049 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
15 Hb_000365_230 0.0662893199 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
16 Hb_004705_170 0.0667793218 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
17 Hb_000170_090 0.0686444813 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
18 Hb_000976_140 0.0687519544 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
19 Hb_002411_110 0.0692370834 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
20 Hb_001377_190 0.0700643194 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001481_060 Hb_001481_060 Hb_001716_020 Hb_001716_020 Hb_001481_060--Hb_001716_020 Hb_007248_030 Hb_007248_030 Hb_001481_060--Hb_007248_030 Hb_002492_010 Hb_002492_010 Hb_001481_060--Hb_002492_010 Hb_000345_160 Hb_000345_160 Hb_001481_060--Hb_000345_160 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_004037_020 Hb_004037_020 Hb_001481_060--Hb_004037_020 Hb_001716_020--Hb_002492_010 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_000029_060 Hb_000029_060 Hb_001716_020--Hb_000029_060 Hb_004586_060 Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_001405_210 Hb_001405_210 Hb_007248_030--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_001856_180 Hb_001856_180 Hb_007248_030--Hb_001856_180 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_004143_100 Hb_004143_100 Hb_002492_010--Hb_004143_100 Hb_000345_160--Hb_004037_020 Hb_004705_170 Hb_004705_170 Hb_000345_160--Hb_004705_170 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_006189_020 Hb_006189_020 Hb_033312_040--Hb_006189_020 Hb_000510_360 Hb_000510_360 Hb_033312_040--Hb_000510_360 Hb_000139_080 Hb_000139_080 Hb_033312_040--Hb_000139_080 Hb_004333_040 Hb_004333_040 Hb_033312_040--Hb_004333_040 Hb_003098_070 Hb_003098_070 Hb_033312_040--Hb_003098_070 Hb_016172_030 Hb_016172_030 Hb_004037_020--Hb_016172_030 Hb_086063_020 Hb_086063_020 Hb_004037_020--Hb_086063_020 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004037_020--Hb_004705_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44373 8.6752 8.11953 9.13008 4.91651 6.8217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.26376 5.31147 5.56601 7.1057 7.48194

CAGE analysis