Hb_001481_090

Information

Type -
Description -
Location Contig1481: 125065-126745
Sequence    

Annotation

kegg
ID rcu:RCOM_0005540
description hypothetical protein
nr
ID XP_012070040.1
description PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03439 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12108: 124886-126607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_090 0.0 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
2 Hb_001766_110 0.063413949 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
3 Hb_000041_270 0.0659459913 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
4 Hb_038172_010 0.0690786097 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
5 Hb_003952_090 0.0702909557 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
6 Hb_003126_080 0.0724065834 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
7 Hb_000656_400 0.0764391252 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
8 Hb_003780_030 0.0768093254 - - PREDICTED: protein CMSS1 [Jatropha curcas]
9 Hb_001369_220 0.0794357917 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
10 Hb_027472_040 0.0817884321 - - SKP1 [Hevea brasiliensis]
11 Hb_000457_100 0.0851532253 - - prohibitin, putative [Ricinus communis]
12 Hb_004491_010 0.0863443705 - - 60S ribosomal protein L51, putative [Ricinus communis]
13 Hb_001159_140 0.0867864771 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
14 Hb_011609_100 0.0885137891 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
15 Hb_002043_190 0.0885524035 - - rwd domain-containing protein, putative [Ricinus communis]
16 Hb_010921_010 0.088590366 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
17 Hb_005993_040 0.0887698896 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
18 Hb_007576_080 0.0897683172 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
19 Hb_000853_170 0.0904834266 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
20 Hb_000210_180 0.0909236098 - - PREDICTED: protein YLS9-like [Jatropha curcas]

Gene co-expression network

sample Hb_001481_090 Hb_001481_090 Hb_001766_110 Hb_001766_110 Hb_001481_090--Hb_001766_110 Hb_000041_270 Hb_000041_270 Hb_001481_090--Hb_000041_270 Hb_038172_010 Hb_038172_010 Hb_001481_090--Hb_038172_010 Hb_003952_090 Hb_003952_090 Hb_001481_090--Hb_003952_090 Hb_003126_080 Hb_003126_080 Hb_001481_090--Hb_003126_080 Hb_000656_400 Hb_000656_400 Hb_001481_090--Hb_000656_400 Hb_001766_110--Hb_000656_400 Hb_001766_110--Hb_003126_080 Hb_000251_130 Hb_000251_130 Hb_001766_110--Hb_000251_130 Hb_001766_110--Hb_003952_090 Hb_000085_050 Hb_000085_050 Hb_001766_110--Hb_000085_050 Hb_000210_180 Hb_000210_180 Hb_000041_270--Hb_000210_180 Hb_096563_010 Hb_096563_010 Hb_000041_270--Hb_096563_010 Hb_003126_050 Hb_003126_050 Hb_000041_270--Hb_003126_050 Hb_000757_060 Hb_000757_060 Hb_000041_270--Hb_000757_060 Hb_004491_010 Hb_004491_010 Hb_000041_270--Hb_004491_010 Hb_003780_030 Hb_003780_030 Hb_038172_010--Hb_003780_030 Hb_002585_040 Hb_002585_040 Hb_038172_010--Hb_002585_040 Hb_027472_040 Hb_027472_040 Hb_038172_010--Hb_027472_040 Hb_014109_040 Hb_014109_040 Hb_038172_010--Hb_014109_040 Hb_000342_100 Hb_000342_100 Hb_038172_010--Hb_000342_100 Hb_002477_280 Hb_002477_280 Hb_003952_090--Hb_002477_280 Hb_001369_220 Hb_001369_220 Hb_003952_090--Hb_001369_220 Hb_002759_150 Hb_002759_150 Hb_003952_090--Hb_002759_150 Hb_018838_030 Hb_018838_030 Hb_003952_090--Hb_018838_030 Hb_003126_080--Hb_000656_400 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_003126_080--Hb_004491_010 Hb_004223_280 Hb_004223_280 Hb_003126_080--Hb_004223_280 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6119 13.0434 9.13954 7.30743 18.4072 16.797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6712 30.6929 11.3177 17.099 8.30806

CAGE analysis