Hb_001481_110

Information

Type -
Description -
Location Contig1481: 167623-168816
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11000g
description POPTRDRAFT_834837; S-adenosylmethionine synthetase 1 family protein
nr
ID XP_002320949.1
description S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
swissprot
ID A9P822
description S-adenosylmethionine synthase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1
trembl
ID A0A067JWS1
description S-adenosylmethionine synthase OS=Jatropha curcas GN=JCGZ_14093 PE=3 SV=1
Gene Ontology
ID GO:0004478
description s-adenosylmethionine synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12111: 167643-168035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_110 0.0 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
2 Hb_005687_060 0.1000189723 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
3 Hb_000369_050 0.1061553933 - - Ankyrin repeat family protein, putative [Theobroma cacao]
4 Hb_001610_050 0.1286572518 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
5 Hb_006816_540 0.1434564675 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
6 Hb_007304_100 0.150844102 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
7 Hb_000987_080 0.1544648483 - - light-inducible protein atls1, putative [Ricinus communis]
8 Hb_000702_040 0.156552523 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
9 Hb_009787_020 0.1580306791 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
10 Hb_002639_120 0.159913471 - - unnamed protein product [Vitis vinifera]
11 Hb_001227_010 0.1611171882 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
12 Hb_007885_120 0.1629955726 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
13 Hb_006890_050 0.1634645403 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
14 Hb_003800_010 0.1645984845 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
15 Hb_103149_010 0.166131004 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
16 Hb_005892_010 0.1696299236 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
17 Hb_004586_230 0.1733908646 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000922_290 0.1736352981 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
19 Hb_000207_420 0.1752519698 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
20 Hb_024357_010 0.1758706145 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]

Gene co-expression network

sample Hb_001481_110 Hb_001481_110 Hb_005687_060 Hb_005687_060 Hb_001481_110--Hb_005687_060 Hb_000369_050 Hb_000369_050 Hb_001481_110--Hb_000369_050 Hb_001610_050 Hb_001610_050 Hb_001481_110--Hb_001610_050 Hb_006816_540 Hb_006816_540 Hb_001481_110--Hb_006816_540 Hb_007304_100 Hb_007304_100 Hb_001481_110--Hb_007304_100 Hb_000987_080 Hb_000987_080 Hb_001481_110--Hb_000987_080 Hb_005687_060--Hb_000369_050 Hb_002639_120 Hb_002639_120 Hb_005687_060--Hb_002639_120 Hb_005687_060--Hb_007304_100 Hb_000702_040 Hb_000702_040 Hb_005687_060--Hb_000702_040 Hb_005687_060--Hb_001610_050 Hb_103149_010 Hb_103149_010 Hb_000369_050--Hb_103149_010 Hb_000369_050--Hb_001610_050 Hb_000369_050--Hb_000702_040 Hb_005892_010 Hb_005892_010 Hb_000369_050--Hb_005892_010 Hb_001610_050--Hb_000702_040 Hb_021443_020 Hb_021443_020 Hb_001610_050--Hb_021443_020 Hb_001610_050--Hb_005892_010 Hb_001610_050--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_001610_050--Hb_006890_050 Hb_001227_010 Hb_001227_010 Hb_001610_050--Hb_001227_010 Hb_007885_120 Hb_007885_120 Hb_006816_540--Hb_007885_120 Hb_161954_010 Hb_161954_010 Hb_006816_540--Hb_161954_010 Hb_006816_540--Hb_006890_050 Hb_004767_010 Hb_004767_010 Hb_006816_540--Hb_004767_010 Hb_002393_060 Hb_002393_060 Hb_006816_540--Hb_002393_060 Hb_006816_540--Hb_001227_010 Hb_000805_330 Hb_000805_330 Hb_007304_100--Hb_000805_330 Hb_008725_190 Hb_008725_190 Hb_007304_100--Hb_008725_190 Hb_003906_150 Hb_003906_150 Hb_007304_100--Hb_003906_150 Hb_055993_010 Hb_055993_010 Hb_007304_100--Hb_055993_010 Hb_000922_290 Hb_000922_290 Hb_000987_080--Hb_000922_290 Hb_000316_080 Hb_000316_080 Hb_000987_080--Hb_000316_080 Hb_000987_080--Hb_005892_010 Hb_002241_020 Hb_002241_020 Hb_000987_080--Hb_002241_020 Hb_013691_040 Hb_013691_040 Hb_000987_080--Hb_013691_040 Hb_002110_210 Hb_002110_210 Hb_000987_080--Hb_002110_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0580158 10.8341 0.303209 10.1041 0.155366 0.160103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.326517 0.192632 0 1.47916 0.730675

CAGE analysis