Hb_001481_120

Information

Type transcription factor
Description TF Family: HB
Location Contig1481: 177051-179808
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07760g
description POPTRDRAFT_799722; homeobox-leucine zipper family protein
nr
ID XP_012070041.1
description PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
swissprot
ID Q05466
description Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1
trembl
ID A0A067L724
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03440 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12113: 177469-178134 , PASA_asmbl_12116: 179751-180003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_120 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
2 Hb_000413_010 0.104804152 - - hypothetical protein JCGZ_21316 [Jatropha curcas]
3 Hb_000000_460 0.1076234895 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
4 Hb_000005_080 0.1109783669 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
5 Hb_005054_290 0.1171849464 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
6 Hb_001277_320 0.1185735379 - - Stem-specific protein TSJT1, putative [Ricinus communis]
7 Hb_001205_070 0.1230692202 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
8 Hb_000905_060 0.1305334065 - - protein with unknown function [Ricinus communis]
9 Hb_001247_100 0.1369179061 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
10 Hb_005143_040 0.1373060439 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
11 Hb_004738_100 0.1382734898 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
12 Hb_001439_100 0.1385235705 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
13 Hb_000705_210 0.139036326 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
14 Hb_000023_280 0.1397252272 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
15 Hb_115825_010 0.1419099351 - - phosphate transporter [Manihot esculenta]
16 Hb_002631_060 0.1428997715 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
17 Hb_001922_050 0.1436759681 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
18 Hb_001653_020 0.1445001968 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
19 Hb_002961_060 0.1454222373 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [Populus euphratica]
20 Hb_002061_040 0.1488439437 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001481_120 Hb_001481_120 Hb_000413_010 Hb_000413_010 Hb_001481_120--Hb_000413_010 Hb_000000_460 Hb_000000_460 Hb_001481_120--Hb_000000_460 Hb_000005_080 Hb_000005_080 Hb_001481_120--Hb_000005_080 Hb_005054_290 Hb_005054_290 Hb_001481_120--Hb_005054_290 Hb_001277_320 Hb_001277_320 Hb_001481_120--Hb_001277_320 Hb_001205_070 Hb_001205_070 Hb_001481_120--Hb_001205_070 Hb_000413_010--Hb_001205_070 Hb_001178_140 Hb_001178_140 Hb_000413_010--Hb_001178_140 Hb_000859_060 Hb_000859_060 Hb_000413_010--Hb_000859_060 Hb_001277_270 Hb_001277_270 Hb_000413_010--Hb_001277_270 Hb_001892_020 Hb_001892_020 Hb_000413_010--Hb_001892_020 Hb_000000_460--Hb_005054_290 Hb_001102_140 Hb_001102_140 Hb_000000_460--Hb_001102_140 Hb_001439_100 Hb_001439_100 Hb_000000_460--Hb_001439_100 Hb_000705_210 Hb_000705_210 Hb_000000_460--Hb_000705_210 Hb_000679_010 Hb_000679_010 Hb_000000_460--Hb_000679_010 Hb_000329_630 Hb_000329_630 Hb_000000_460--Hb_000329_630 Hb_001519_050 Hb_001519_050 Hb_000005_080--Hb_001519_050 Hb_000005_080--Hb_000705_210 Hb_002061_040 Hb_002061_040 Hb_000005_080--Hb_002061_040 Hb_001247_100 Hb_001247_100 Hb_000005_080--Hb_001247_100 Hb_000009_460 Hb_000009_460 Hb_000005_080--Hb_000009_460 Hb_004738_100 Hb_004738_100 Hb_000005_080--Hb_004738_100 Hb_005054_290--Hb_000329_630 Hb_005054_290--Hb_001439_100 Hb_005054_290--Hb_001102_140 Hb_000003_480 Hb_000003_480 Hb_005054_290--Hb_000003_480 Hb_000023_280 Hb_000023_280 Hb_005054_290--Hb_000023_280 Hb_000010_460 Hb_000010_460 Hb_001277_320--Hb_000010_460 Hb_008771_030 Hb_008771_030 Hb_001277_320--Hb_008771_030 Hb_001722_100 Hb_001722_100 Hb_001277_320--Hb_001722_100 Hb_001277_320--Hb_002061_040 Hb_003787_010 Hb_003787_010 Hb_001277_320--Hb_003787_010 Hb_002216_040 Hb_002216_040 Hb_001277_320--Hb_002216_040 Hb_018790_060 Hb_018790_060 Hb_001205_070--Hb_018790_060 Hb_002631_060 Hb_002631_060 Hb_001205_070--Hb_002631_060 Hb_001488_070 Hb_001488_070 Hb_001205_070--Hb_001488_070 Hb_003376_350 Hb_003376_350 Hb_001205_070--Hb_003376_350 Hb_000061_420 Hb_000061_420 Hb_001205_070--Hb_000061_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8797 19.4093 5.83591 23.1415 11.9804 14.469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8314 27.9511 22.993 20.7101 1.29575

CAGE analysis