Hb_001481_140

Information

Type -
Description -
Location Contig1481: 190627-194266
Sequence    

Annotation

kegg
ID rcu:RCOM_0006390
description Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative (EC:3.1.3.16)
nr
ID XP_012070044.1
description PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
swissprot
ID Q9ZQP1
description Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2
trembl
ID A0A067KUT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03443 PE=4 SV=1
Gene Ontology
ID GO:0004725
description dual specificity protein phosphatase dsp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12120: 190567-192409 , PASA_asmbl_12121: 192410-194274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_140 0.0 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
2 Hb_001519_030 0.0646469711 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
3 Hb_001005_080 0.0677561912 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
4 Hb_000417_260 0.0759216687 - - protein with unknown function [Ricinus communis]
5 Hb_003462_120 0.0793837428 - - Acidic endochitinase [Theobroma cacao]
6 Hb_004672_010 0.082347352 - - ecotropic viral integration site, putative [Ricinus communis]
7 Hb_001008_090 0.0865618373 - - cytochrome C oxidase, putative [Ricinus communis]
8 Hb_028515_010 0.0879143219 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
9 Hb_005568_120 0.0891930741 - - Prephenate dehydratase [Hevea brasiliensis]
10 Hb_114310_080 0.0894236096 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005137_060 0.0902799118 - - -
12 Hb_032208_060 0.0908160185 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
13 Hb_002239_060 0.0917378311 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
14 Hb_000817_030 0.0925415401 - - mak, putative [Ricinus communis]
15 Hb_003783_030 0.0926345517 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
16 Hb_000072_180 0.0975139193 - - PREDICTED: EVI5-like protein [Jatropha curcas]
17 Hb_012114_040 0.0980338308 - - DNA binding protein, putative [Ricinus communis]
18 Hb_006569_100 0.0992239819 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
19 Hb_011953_020 0.0994566866 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
20 Hb_007192_100 0.0997531643 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_001481_140 Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001481_140--Hb_001519_030 Hb_001005_080 Hb_001005_080 Hb_001481_140--Hb_001005_080 Hb_000417_260 Hb_000417_260 Hb_001481_140--Hb_000417_260 Hb_003462_120 Hb_003462_120 Hb_001481_140--Hb_003462_120 Hb_004672_010 Hb_004672_010 Hb_001481_140--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_001481_140--Hb_001008_090 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090 Hb_001005_080--Hb_000417_260 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_152910_020 Hb_152910_020 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_000384_120 Hb_000384_120 Hb_000417_260--Hb_000384_120 Hb_000417_260--Hb_004672_010 Hb_000417_260--Hb_001008_090 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_003462_120--Hb_004672_010 Hb_000175_030 Hb_000175_030 Hb_003462_120--Hb_000175_030 Hb_000934_190 Hb_000934_190 Hb_003462_120--Hb_000934_190 Hb_003783_030 Hb_003783_030 Hb_003462_120--Hb_003783_030 Hb_004672_010--Hb_005137_060 Hb_000046_350 Hb_000046_350 Hb_004672_010--Hb_000046_350 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050 Hb_001008_090--Hb_005278_040 Hb_004659_060 Hb_004659_060 Hb_001008_090--Hb_004659_060 Hb_001008_090--Hb_006569_100 Hb_000300_220 Hb_000300_220 Hb_001008_090--Hb_000300_220 Hb_183961_010 Hb_183961_010 Hb_001008_090--Hb_183961_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1249 28.8931 24.9157 64.9423 22.9515 45.2713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.673 148.615 160.686 71.8803 38.4687

CAGE analysis