Hb_001481_160

Information

Type -
Description -
Location Contig1481: 202692-203811
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07800g
description POPTRDRAFT_757060; hypothetical protein
nr
ID XP_011031932.1
description PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
swissprot
ID Q9SKK8
description RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2
trembl
ID B9GYM2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s07800g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12123: 202819-203544 , PASA_asmbl_12124: 203609-204107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_160 0.0 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
2 Hb_162150_010 0.1408176792 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002693_060 0.1409646607 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_006698_040 0.1464180785 - - bHLH1 transcription factor [Hevea brasiliensis]
5 Hb_001160_070 0.148144463 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
6 Hb_008221_170 0.1484310513 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 isoform X1 [Populus euphratica]
7 Hb_000856_180 0.1579944535 - - calcium-dependent protein kinase [Hevea brasiliensis]
8 Hb_131035_010 0.1595678859 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001840_090 0.1604644619 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
10 Hb_013726_070 0.1615187101 - - PREDICTED: UPF0202 protein At1g10490-like [Jatropha curcas]
11 Hb_032969_020 0.1622871985 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003203_020 0.1629137373 - - unknown [Lotus japonicus]
13 Hb_003371_230 0.1640849904 - - lactase-like b precursor [Scleropages formosus]
14 Hb_024879_010 0.1663028535 - - unknown [Glycine max]
15 Hb_002874_090 0.1670281519 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
16 Hb_008177_030 0.1671679868 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_074715_010 0.1684055996 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
18 Hb_004128_130 0.1686905337 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
19 Hb_002836_100 0.1693925886 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
20 Hb_007747_080 0.1696950773 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001481_160 Hb_001481_160 Hb_162150_010 Hb_162150_010 Hb_001481_160--Hb_162150_010 Hb_002693_060 Hb_002693_060 Hb_001481_160--Hb_002693_060 Hb_006698_040 Hb_006698_040 Hb_001481_160--Hb_006698_040 Hb_001160_070 Hb_001160_070 Hb_001481_160--Hb_001160_070 Hb_008221_170 Hb_008221_170 Hb_001481_160--Hb_008221_170 Hb_000856_180 Hb_000856_180 Hb_001481_160--Hb_000856_180 Hb_004994_090 Hb_004994_090 Hb_162150_010--Hb_004994_090 Hb_005489_140 Hb_005489_140 Hb_162150_010--Hb_005489_140 Hb_049436_010 Hb_049436_010 Hb_162150_010--Hb_049436_010 Hb_002344_060 Hb_002344_060 Hb_162150_010--Hb_002344_060 Hb_062416_010 Hb_062416_010 Hb_162150_010--Hb_062416_010 Hb_002874_090 Hb_002874_090 Hb_162150_010--Hb_002874_090 Hb_001269_140 Hb_001269_140 Hb_002693_060--Hb_001269_140 Hb_001105_160 Hb_001105_160 Hb_002693_060--Hb_001105_160 Hb_011716_090 Hb_011716_090 Hb_002693_060--Hb_011716_090 Hb_000140_480 Hb_000140_480 Hb_002693_060--Hb_000140_480 Hb_001427_070 Hb_001427_070 Hb_002693_060--Hb_001427_070 Hb_083799_010 Hb_083799_010 Hb_002693_060--Hb_083799_010 Hb_084646_010 Hb_084646_010 Hb_006698_040--Hb_084646_010 Hb_001584_120 Hb_001584_120 Hb_006698_040--Hb_001584_120 Hb_155159_020 Hb_155159_020 Hb_006698_040--Hb_155159_020 Hb_000025_630 Hb_000025_630 Hb_006698_040--Hb_000025_630 Hb_187679_010 Hb_187679_010 Hb_006698_040--Hb_187679_010 Hb_172632_120 Hb_172632_120 Hb_006698_040--Hb_172632_120 Hb_000334_260 Hb_000334_260 Hb_001160_070--Hb_000334_260 Hb_002995_040 Hb_002995_040 Hb_001160_070--Hb_002995_040 Hb_001497_060 Hb_001497_060 Hb_001160_070--Hb_001497_060 Hb_001160_070--Hb_083799_010 Hb_001307_240 Hb_001307_240 Hb_001160_070--Hb_001307_240 Hb_002836_100 Hb_002836_100 Hb_001160_070--Hb_002836_100 Hb_002046_020 Hb_002046_020 Hb_008221_170--Hb_002046_020 Hb_002631_200 Hb_002631_200 Hb_008221_170--Hb_002631_200 Hb_008221_170--Hb_001105_160 Hb_000487_380 Hb_000487_380 Hb_008221_170--Hb_000487_380 Hb_002662_050 Hb_002662_050 Hb_008221_170--Hb_002662_050 Hb_007576_200 Hb_007576_200 Hb_008221_170--Hb_007576_200 Hb_003071_020 Hb_003071_020 Hb_000856_180--Hb_003071_020 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_000856_180--Hb_002046_020 Hb_000905_170 Hb_000905_170 Hb_000856_180--Hb_000905_170 Hb_000236_410 Hb_000236_410 Hb_000856_180--Hb_000236_410 Hb_000009_330 Hb_000009_330 Hb_000856_180--Hb_000009_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3423 13.5612 4.17325 18.7904 3.28628 9.61773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.5339 5.13909 6.27702 15.9094 3.6442

CAGE analysis