Hb_001481_170

Information

Type -
Description -
Location Contig1481: 205675-210345
Sequence    

Annotation

kegg
ID rcu:RCOM_0006420
description hypothetical protein
nr
ID XP_002531470.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID B9SZQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0006420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12127: 205726-210331 , PASA_asmbl_12128: 208923-209271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003683_050 0.0613727877 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
3 Hb_001195_760 0.0773204177 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
4 Hb_001305_010 0.0776256505 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
5 Hb_000451_010 0.0808961908 - - secretory carrier membrane protein, putative [Ricinus communis]
6 Hb_012022_160 0.0835523035 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
7 Hb_000302_010 0.0836698704 - - Vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_000340_300 0.0861298994 - - methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
9 Hb_011344_210 0.0862489062 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
10 Hb_000710_020 0.0874258707 - - PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Populus euphratica]
11 Hb_001936_080 0.0874447367 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
12 Hb_003929_250 0.0884265636 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
13 Hb_000815_320 0.0885196493 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
14 Hb_000768_170 0.0887105295 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
15 Hb_003030_070 0.089002891 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
16 Hb_000416_040 0.0906974164 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
17 Hb_001821_010 0.0915147155 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
18 Hb_001662_070 0.0917167062 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
19 Hb_120410_010 0.0919727064 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
20 Hb_004116_060 0.0921256186 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]

Gene co-expression network

sample Hb_001481_170 Hb_001481_170 Hb_003683_050 Hb_003683_050 Hb_001481_170--Hb_003683_050 Hb_001195_760 Hb_001195_760 Hb_001481_170--Hb_001195_760 Hb_001305_010 Hb_001305_010 Hb_001481_170--Hb_001305_010 Hb_000451_010 Hb_000451_010 Hb_001481_170--Hb_000451_010 Hb_012022_160 Hb_012022_160 Hb_001481_170--Hb_012022_160 Hb_000302_010 Hb_000302_010 Hb_001481_170--Hb_000302_010 Hb_003683_050--Hb_001195_760 Hb_001936_080 Hb_001936_080 Hb_003683_050--Hb_001936_080 Hb_011970_030 Hb_011970_030 Hb_003683_050--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003683_050--Hb_000670_020 Hb_000085_180 Hb_000085_180 Hb_003683_050--Hb_000085_180 Hb_000340_300 Hb_000340_300 Hb_001195_760--Hb_000340_300 Hb_000661_250 Hb_000661_250 Hb_001195_760--Hb_000661_250 Hb_000089_220 Hb_000089_220 Hb_001195_760--Hb_000089_220 Hb_003406_010 Hb_003406_010 Hb_001195_760--Hb_003406_010 Hb_148912_010 Hb_148912_010 Hb_001195_760--Hb_148912_010 Hb_007951_060 Hb_007951_060 Hb_001305_010--Hb_007951_060 Hb_006185_050 Hb_006185_050 Hb_001305_010--Hb_006185_050 Hb_003417_020 Hb_003417_020 Hb_001305_010--Hb_003417_020 Hb_002530_030 Hb_002530_030 Hb_001305_010--Hb_002530_030 Hb_000327_120 Hb_000327_120 Hb_001305_010--Hb_000327_120 Hb_000853_430 Hb_000853_430 Hb_001305_010--Hb_000853_430 Hb_000618_040 Hb_000618_040 Hb_000451_010--Hb_000618_040 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_004907_080 Hb_004907_080 Hb_000451_010--Hb_004907_080 Hb_007904_200 Hb_007904_200 Hb_000451_010--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_000428_050 Hb_000428_050 Hb_012022_160--Hb_000428_050 Hb_004310_150 Hb_004310_150 Hb_012022_160--Hb_004310_150 Hb_003010_030 Hb_003010_030 Hb_012022_160--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_012022_160--Hb_000093_160 Hb_012022_160--Hb_006185_050 Hb_012022_160--Hb_001195_760 Hb_001489_060 Hb_001489_060 Hb_000302_010--Hb_001489_060 Hb_004735_040 Hb_004735_040 Hb_000302_010--Hb_004735_040 Hb_001564_130 Hb_001564_130 Hb_000302_010--Hb_001564_130 Hb_000580_090 Hb_000580_090 Hb_000302_010--Hb_000580_090 Hb_007477_070 Hb_007477_070 Hb_000302_010--Hb_007477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2065 16.4729 27.5729 23.0637 37.8049 33.8839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.3466 39.6221 31.4982 10.0142 12.4974

CAGE analysis