Hb_001484_020

Information

Type -
Description -
Location Contig1484: 81157-90708
Sequence    

Annotation

kegg
ID rcu:RCOM_0768440
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative (EC:2.5.1.54)
nr
ID XP_002531676.1
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P29976
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2
trembl
ID B9T0A7
description Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0768440 PE=4 SV=1
Gene Ontology
ID GO:0003849
description phospho-2-dehydro-3-deoxyheptonate aldolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12195: 81128-85002 , PASA_asmbl_12196: 81979-82223
cDNA
(Sanger)
(ID:Location)		 013_J03.ab1: 83902-84994

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001484_020 0.0 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
2 Hb_000077_390 0.1101557983 transcription factor TF Family: ERF hypothetical protein POPTR_0019s13330g [Populus trichocarpa]
3 Hb_000976_280 0.1217411179 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
4 Hb_003077_050 0.1325491238 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
5 Hb_011631_010 0.1368018892 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
6 Hb_000019_040 0.1384544131 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
7 Hb_013241_010 0.1417869334 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
8 Hb_002685_200 0.1422541706 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
9 Hb_000638_280 0.147515258 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
10 Hb_001638_030 0.1496001916 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
11 Hb_000512_010 0.1506588326 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
12 Hb_000045_260 0.1506812589 - - protein with unknown function [Ricinus communis]
13 Hb_002042_170 0.1526225081 - - RING/U-box superfamily protein [Theobroma cacao]
14 Hb_004899_330 0.1537544703 transcription factor TF Family: Tify plastid jasmonates ZIM-domain protein [Hevea brasiliensis]
15 Hb_001376_010 0.1541655573 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
16 Hb_174829_020 0.1543640936 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
17 Hb_000084_240 0.1560726347 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
18 Hb_004117_170 0.157387489 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
19 Hb_006538_130 0.1579100367 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
20 Hb_005499_010 0.1592024502 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001484_020 Hb_001484_020 Hb_000077_390 Hb_000077_390 Hb_001484_020--Hb_000077_390 Hb_000976_280 Hb_000976_280 Hb_001484_020--Hb_000976_280 Hb_003077_050 Hb_003077_050 Hb_001484_020--Hb_003077_050 Hb_011631_010 Hb_011631_010 Hb_001484_020--Hb_011631_010 Hb_000019_040 Hb_000019_040 Hb_001484_020--Hb_000019_040 Hb_013241_010 Hb_013241_010 Hb_001484_020--Hb_013241_010 Hb_000077_390--Hb_003077_050 Hb_000077_390--Hb_000976_280 Hb_127311_010 Hb_127311_010 Hb_000077_390--Hb_127311_010 Hb_000077_390--Hb_013241_010 Hb_000042_330 Hb_000042_330 Hb_000077_390--Hb_000042_330 Hb_000976_280--Hb_000019_040 Hb_006788_140 Hb_006788_140 Hb_000976_280--Hb_006788_140 Hb_003605_240 Hb_003605_240 Hb_000976_280--Hb_003605_240 Hb_000976_280--Hb_013241_010 Hb_000069_330 Hb_000069_330 Hb_003077_050--Hb_000069_330 Hb_004117_170 Hb_004117_170 Hb_003077_050--Hb_004117_170 Hb_002685_200 Hb_002685_200 Hb_003077_050--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_003077_050--Hb_000186_200 Hb_000045_260 Hb_000045_260 Hb_011631_010--Hb_000045_260 Hb_002897_050 Hb_002897_050 Hb_011631_010--Hb_002897_050 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_002107_060 Hb_002107_060 Hb_011631_010--Hb_002107_060 Hb_000638_280 Hb_000638_280 Hb_011631_010--Hb_000638_280 Hb_000084_240 Hb_000084_240 Hb_011631_010--Hb_000084_240 Hb_000019_040--Hb_006788_140 Hb_000512_010 Hb_000512_010 Hb_000019_040--Hb_000512_010 Hb_001766_020 Hb_001766_020 Hb_000019_040--Hb_001766_020 Hb_052764_030 Hb_052764_030 Hb_000019_040--Hb_052764_030 Hb_001104_170 Hb_001104_170 Hb_000019_040--Hb_001104_170 Hb_000432_090 Hb_000432_090 Hb_013241_010--Hb_000432_090 Hb_084490_010 Hb_084490_010 Hb_013241_010--Hb_084490_010 Hb_000815_240 Hb_000815_240 Hb_013241_010--Hb_000815_240 Hb_003925_040 Hb_003925_040 Hb_013241_010--Hb_003925_040 Hb_013241_010--Hb_127311_010 Hb_012239_020 Hb_012239_020 Hb_013241_010--Hb_012239_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.818 536.141 359.656 159.66 41.1555 43.0819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
199.352 83.4435 197.408 106.133 102.469

CAGE analysis