Hb_001484_060

Information

Type -
Description -
Location Contig1484: 106598-115228
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07480g
description POPTRDRAFT_1077353; hypothetical protein
nr
ID XP_012081605.1
description PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18645 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12197: 106621-107188 , PASA_asmbl_12198: 111995-115198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001484_060 0.0 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
2 Hb_000563_210 0.0912759898 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
3 Hb_000676_050 0.0926135151 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
4 Hb_001621_170 0.1004270387 - - protein binding protein, putative [Ricinus communis]
5 Hb_000933_150 0.1018433777 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
6 Hb_001124_120 0.1047752648 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
7 Hb_002349_040 0.1064015898 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
8 Hb_008887_050 0.1076656697 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
9 Hb_001357_380 0.1170913602 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000053_130 0.1174868373 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
11 Hb_000529_080 0.117534736 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
12 Hb_000189_330 0.1183134824 - - PREDICTED: ER membrane protein complex subunit 2 [Jatropha curcas]
13 Hb_010968_010 0.1194745632 - - Golgi snare 12 isoform 1 [Theobroma cacao]
14 Hb_000106_130 0.1203645939 - - unnamed protein product [Vitis vinifera]
15 Hb_027043_020 0.1221970588 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001983_030 0.1226106275 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
17 Hb_031939_010 0.122665389 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
18 Hb_007632_110 0.1246492383 - - chromatin regulatory protein sir2, putative [Ricinus communis]
19 Hb_000205_120 0.1251109112 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
20 Hb_006634_040 0.1251405795 - - hypothetical protein VITISV_030841 [Vitis vinifera]

Gene co-expression network

sample Hb_001484_060 Hb_001484_060 Hb_000563_210 Hb_000563_210 Hb_001484_060--Hb_000563_210 Hb_000676_050 Hb_000676_050 Hb_001484_060--Hb_000676_050 Hb_001621_170 Hb_001621_170 Hb_001484_060--Hb_001621_170 Hb_000933_150 Hb_000933_150 Hb_001484_060--Hb_000933_150 Hb_001124_120 Hb_001124_120 Hb_001484_060--Hb_001124_120 Hb_002349_040 Hb_002349_040 Hb_001484_060--Hb_002349_040 Hb_000076_120 Hb_000076_120 Hb_000563_210--Hb_000076_120 Hb_009775_050 Hb_009775_050 Hb_000563_210--Hb_009775_050 Hb_000053_130 Hb_000053_130 Hb_000563_210--Hb_000053_130 Hb_001341_050 Hb_001341_050 Hb_000563_210--Hb_001341_050 Hb_000563_210--Hb_001124_120 Hb_010968_010 Hb_010968_010 Hb_000676_050--Hb_010968_010 Hb_002784_050 Hb_002784_050 Hb_000676_050--Hb_002784_050 Hb_008887_050 Hb_008887_050 Hb_000676_050--Hb_008887_050 Hb_000676_050--Hb_000933_150 Hb_002639_150 Hb_002639_150 Hb_000676_050--Hb_002639_150 Hb_000205_120 Hb_000205_120 Hb_000676_050--Hb_000205_120 Hb_000189_330 Hb_000189_330 Hb_001621_170--Hb_000189_330 Hb_003020_010 Hb_003020_010 Hb_001621_170--Hb_003020_010 Hb_016461_010 Hb_016461_010 Hb_001621_170--Hb_016461_010 Hb_011609_080 Hb_011609_080 Hb_001621_170--Hb_011609_080 Hb_000395_020 Hb_000395_020 Hb_001621_170--Hb_000395_020 Hb_000390_180 Hb_000390_180 Hb_001621_170--Hb_000390_180 Hb_000933_150--Hb_008887_050 Hb_006096_040 Hb_006096_040 Hb_000933_150--Hb_006096_040 Hb_000933_150--Hb_010968_010 Hb_031527_100 Hb_031527_100 Hb_000933_150--Hb_031527_100 Hb_000085_060 Hb_000085_060 Hb_001124_120--Hb_000085_060 Hb_150360_030 Hb_150360_030 Hb_001124_120--Hb_150360_030 Hb_001124_120--Hb_002349_040 Hb_000699_130 Hb_000699_130 Hb_001124_120--Hb_000699_130 Hb_031939_010 Hb_031939_010 Hb_001124_120--Hb_031939_010 Hb_007218_080 Hb_007218_080 Hb_001124_120--Hb_007218_080 Hb_002349_040--Hb_150360_030 Hb_001221_320 Hb_001221_320 Hb_002349_040--Hb_001221_320 Hb_000109_090 Hb_000109_090 Hb_002349_040--Hb_000109_090 Hb_002349_040--Hb_000053_130 Hb_004310_130 Hb_004310_130 Hb_002349_040--Hb_004310_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.53289 2.0812 7.74909 3.23848 10.4279 8.91033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4875 4.57336 2.70539 3.63984 1.77807

CAGE analysis