Hb_001484_070

Information

Type -
Description -
Location Contig1484: 131766-141000
Sequence    

Annotation

kegg
ID rcu:RCOM_0038350
description hypothetical protein
nr
ID XP_002532875.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SJZ6
description Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana GN=MED18 PE=1 SV=1
trembl
ID B9T3Q6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0038350 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12200: 131807-140986 , PASA_asmbl_12201: 131807-140986 , PASA_asmbl_12202: 132704-132974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001484_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000920_110 0.0528510384 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
3 Hb_000453_120 0.0591891204 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
4 Hb_000261_140 0.06209352 - - -
5 Hb_001979_040 0.0626027202 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
6 Hb_001085_120 0.06346944 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
7 Hb_002056_050 0.067663663 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
8 Hb_001123_130 0.0681243901 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
9 Hb_010175_040 0.0696573713 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
10 Hb_003077_040 0.0720111908 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
11 Hb_001141_140 0.0764733754 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
12 Hb_003018_010 0.0772552675 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
13 Hb_003226_100 0.0775187764 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
14 Hb_006925_040 0.0778225177 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
15 Hb_000527_060 0.0790472485 - - Protein C20orf11, putative [Ricinus communis]
16 Hb_007441_040 0.0791134335 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
17 Hb_000417_360 0.0795274524 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
18 Hb_002864_050 0.079688038 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
19 Hb_157022_010 0.0800850438 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
20 Hb_026053_020 0.0803198636 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]

Gene co-expression network

sample Hb_001484_070 Hb_001484_070 Hb_000920_110 Hb_000920_110 Hb_001484_070--Hb_000920_110 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120 Hb_002056_050 Hb_002056_050 Hb_001484_070--Hb_002056_050 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_000920_110--Hb_002056_050 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040 Hb_000453_120--Hb_001085_120 Hb_001512_080 Hb_001512_080 Hb_000453_120--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_000453_120--Hb_002110_200 Hb_000086_280 Hb_000086_280 Hb_000453_120--Hb_000086_280 Hb_003077_040 Hb_003077_040 Hb_000453_120--Hb_003077_040 Hb_000261_140--Hb_010175_040 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000261_140--Hb_000920_110 Hb_000638_250 Hb_000638_250 Hb_000261_140--Hb_000638_250 Hb_004143_150 Hb_004143_150 Hb_000261_140--Hb_004143_150 Hb_005511_160 Hb_005511_160 Hb_001979_040--Hb_005511_160 Hb_001979_040--Hb_000920_110 Hb_001780_040 Hb_001780_040 Hb_001979_040--Hb_001780_040 Hb_000731_190 Hb_000731_190 Hb_001979_040--Hb_000731_190 Hb_002235_350 Hb_002235_350 Hb_001979_040--Hb_002235_350 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_002056_050--Hb_003226_100 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_000172_320 Hb_000172_320 Hb_002056_050--Hb_000172_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4734 8.71754 21.6641 16.6111 15.8883 19.8944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6902 59.2515 33.0563 17.2443 13.6317

CAGE analysis