Hb_001484_100

Information

Type -
Description -
Location Contig1484: 156541-159194
Sequence    

Annotation

kegg
ID vvi:100245884
description CYN, Cyanase; Cyanate hydratase
nr
ID XP_012081601.1
description PREDICTED: cyanate hydratase [Jatropha curcas]
swissprot
ID A5BJL8
description Cyanate hydratase OS=Vitis vinifera GN=CYN PE=3 SV=1
trembl
ID A0A067KD26
description Cyanate hydratase OS=Jatropha curcas GN=CYN PE=3 SV=1
Gene Ontology
ID GO:0005829
description cyanate hydratase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12208: 156558-159182 , PASA_asmbl_12209: 158509-158772
cDNA
(Sanger)
(ID:Location)		 021_J17.ab1: 156626-159182

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001484_100 0.0 - - PREDICTED: cyanate hydratase [Jatropha curcas]
2 Hb_005054_310 0.0977112943 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
3 Hb_000836_370 0.1016873771 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
4 Hb_085364_010 0.102363742 - - PREDICTED: nicalin-1-like [Populus euphratica]
5 Hb_003078_030 0.1062627481 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
6 Hb_005649_090 0.1074990015 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
7 Hb_030545_030 0.1177835238 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
8 Hb_000227_310 0.1189305245 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
9 Hb_096819_010 0.1199256467 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
10 Hb_003226_110 0.1211924165 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
11 Hb_000056_300 0.1235627719 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
12 Hb_002248_130 0.1279050771 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
13 Hb_004195_120 0.1281227821 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_010346_020 0.131888207 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
15 Hb_000264_080 0.1357915315 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
16 Hb_000163_230 0.136046033 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
17 Hb_003992_180 0.1388575491 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
18 Hb_002311_140 0.1389747249 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
19 Hb_007017_070 0.1397377737 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
20 Hb_003228_030 0.1397735895 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001484_100 Hb_001484_100 Hb_005054_310 Hb_005054_310 Hb_001484_100--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_001484_100--Hb_000836_370 Hb_085364_010 Hb_085364_010 Hb_001484_100--Hb_085364_010 Hb_003078_030 Hb_003078_030 Hb_001484_100--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_001484_100--Hb_005649_090 Hb_030545_030 Hb_030545_030 Hb_001484_100--Hb_030545_030 Hb_005054_310--Hb_000836_370 Hb_003228_030 Hb_003228_030 Hb_005054_310--Hb_003228_030 Hb_000056_300 Hb_000056_300 Hb_005054_310--Hb_000056_300 Hb_000227_310 Hb_000227_310 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_005000_300 Hb_005000_300 Hb_000836_370--Hb_005000_300 Hb_000836_370--Hb_000056_300 Hb_001231_080 Hb_001231_080 Hb_000836_370--Hb_001231_080 Hb_000836_370--Hb_003078_030 Hb_002311_140 Hb_002311_140 Hb_085364_010--Hb_002311_140 Hb_085364_010--Hb_030545_030 Hb_085364_010--Hb_003078_030 Hb_004526_010 Hb_004526_010 Hb_085364_010--Hb_004526_010 Hb_002812_010 Hb_002812_010 Hb_085364_010--Hb_002812_010 Hb_003078_030--Hb_000056_300 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_000163_230 Hb_000163_230 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_003078_030--Hb_005000_300 Hb_004195_120 Hb_004195_120 Hb_005649_090--Hb_004195_120 Hb_005649_090--Hb_000056_300 Hb_005649_090--Hb_001009_090 Hb_002903_140 Hb_002903_140 Hb_005649_090--Hb_002903_140 Hb_003226_110 Hb_003226_110 Hb_005649_090--Hb_003226_110 Hb_005649_090--Hb_030545_030 Hb_030545_030--Hb_002903_140 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_030545_030--Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_030545_030--Hb_007017_070 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.9861 227.228 149.733 91.9442 57.7328 91.4491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4681 32.8656 8.05606 49.1995 38.7435

CAGE analysis