Hb_001484_120

Information

Type -
Description -
Location Contig1484: 180848-183910
Sequence    

Annotation

kegg
ID pop:POPTR_2287s00200g
description hypothetical protein
nr
ID XP_006386999.1
description hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
swissprot
ID O22793
description Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana GN=MORF2 PE=1 SV=1
trembl
ID U7DWJ1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_2287s00200g PE=4 SV=1
Gene Ontology
ID GO:0005739
description multiple organellar rna editing factor chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001484_120 0.0 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
2 Hb_067345_010 0.0954253657 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
3 Hb_002805_070 0.0961049616 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
4 Hb_000048_140 0.0981803543 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
5 Hb_002196_020 0.0981963838 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_005883_050 0.0985413103 - - PREDICTED: transportin-3 [Jatropha curcas]
7 Hb_152079_010 0.1029513955 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
8 Hb_000436_040 0.1039333219 - - PREDICTED: transportin-1 [Jatropha curcas]
9 Hb_025012_010 0.1045705385 - - PREDICTED: importin-4 [Vitis vinifera]
10 Hb_004204_020 0.1055739928 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
11 Hb_024714_020 0.1084733308 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_125092_020 0.1106329401 - - PREDICTED: nucleolin 1-like isoform X1 [Jatropha curcas]
13 Hb_000915_050 0.1106417915 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000173_510 0.1107522019 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
15 Hb_000703_220 0.1113383109 - - PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
16 Hb_041091_010 0.1122250876 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
17 Hb_000627_080 0.1135717071 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_028639_010 0.1137895159 - - transporter, putative [Ricinus communis]
19 Hb_000160_040 0.1145170675 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
20 Hb_002759_280 0.1149622789 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]

Gene co-expression network

sample Hb_001484_120 Hb_001484_120 Hb_067345_010 Hb_067345_010 Hb_001484_120--Hb_067345_010 Hb_002805_070 Hb_002805_070 Hb_001484_120--Hb_002805_070 Hb_000048_140 Hb_000048_140 Hb_001484_120--Hb_000048_140 Hb_002196_020 Hb_002196_020 Hb_001484_120--Hb_002196_020 Hb_005883_050 Hb_005883_050 Hb_001484_120--Hb_005883_050 Hb_152079_010 Hb_152079_010 Hb_001484_120--Hb_152079_010 Hb_001617_060 Hb_001617_060 Hb_067345_010--Hb_001617_060 Hb_025012_010 Hb_025012_010 Hb_067345_010--Hb_025012_010 Hb_005679_050 Hb_005679_050 Hb_067345_010--Hb_005679_050 Hb_029142_010 Hb_029142_010 Hb_067345_010--Hb_029142_010 Hb_000347_130 Hb_000347_130 Hb_067345_010--Hb_000347_130 Hb_000613_080 Hb_000613_080 Hb_067345_010--Hb_000613_080 Hb_090804_010 Hb_090804_010 Hb_002805_070--Hb_090804_010 Hb_039253_010 Hb_039253_010 Hb_002805_070--Hb_039253_010 Hb_011689_020 Hb_011689_020 Hb_002805_070--Hb_011689_020 Hb_001102_150 Hb_001102_150 Hb_002805_070--Hb_001102_150 Hb_005839_060 Hb_005839_060 Hb_002805_070--Hb_005839_060 Hb_033834_060 Hb_033834_060 Hb_002805_070--Hb_033834_060 Hb_028639_010 Hb_028639_010 Hb_000048_140--Hb_028639_010 Hb_002200_130 Hb_002200_130 Hb_000048_140--Hb_002200_130 Hb_000034_050 Hb_000034_050 Hb_000048_140--Hb_000034_050 Hb_003362_040 Hb_003362_040 Hb_000048_140--Hb_003362_040 Hb_007407_040 Hb_007407_040 Hb_000048_140--Hb_007407_040 Hb_000230_330 Hb_000230_330 Hb_000048_140--Hb_000230_330 Hb_000318_510 Hb_000318_510 Hb_002196_020--Hb_000318_510 Hb_000321_070 Hb_000321_070 Hb_002196_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_002196_020--Hb_000160_040 Hb_002196_020--Hb_067345_010 Hb_006332_010 Hb_006332_010 Hb_002196_020--Hb_006332_010 Hb_000915_050 Hb_000915_050 Hb_002196_020--Hb_000915_050 Hb_071736_010 Hb_071736_010 Hb_005883_050--Hb_071736_010 Hb_000120_500 Hb_000120_500 Hb_005883_050--Hb_000120_500 Hb_003434_060 Hb_003434_060 Hb_005883_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_005883_050--Hb_000390_060 Hb_005754_060 Hb_005754_060 Hb_005883_050--Hb_005754_060 Hb_004447_060 Hb_004447_060 Hb_005883_050--Hb_004447_060 Hb_002893_150 Hb_002893_150 Hb_152079_010--Hb_002893_150 Hb_000531_090 Hb_000531_090 Hb_152079_010--Hb_000531_090 Hb_010423_020 Hb_010423_020 Hb_152079_010--Hb_010423_020 Hb_001575_040 Hb_001575_040 Hb_152079_010--Hb_001575_040 Hb_000789_080 Hb_000789_080 Hb_152079_010--Hb_000789_080 Hb_152079_010--Hb_000915_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.09646 2.36703 2.38193 2.61963 6.84098 11.8875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55608 3.77658 5.6144 5.2091 2.01879

CAGE analysis