Hb_001486_080

Information

Type -
Description -
Location Contig1486: 55422-60321
Sequence    

Annotation

kegg
ID rcu:RCOM_1120960
description eukaryotic translation initiation factor 4e type, putative
nr
ID XP_012070439.1
description PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
swissprot
ID A3RCV9
description Eukaryotic translation initiation factor NCBP OS=Triticum aestivum GN=NCBP PE=2 SV=1
trembl
ID A0A067KXK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02713 PE=3 SV=1
Gene Ontology
ID GO:0005829
description cap-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12224: 55385-60327 , PASA_asmbl_12225: 55679-58294
cDNA
(Sanger)
(ID:Location)		 017_B15.ab1: 55506-59901

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_080 0.0 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
2 Hb_000406_240 0.069011351 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
3 Hb_002301_220 0.0780078783 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
4 Hb_007982_070 0.0811142982 - - PREDICTED: protein CPR-5 [Jatropha curcas]
5 Hb_008554_120 0.083903096 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
6 Hb_005883_010 0.0893862898 - - conserved hypothetical protein [Ricinus communis]
7 Hb_134951_010 0.0896745793 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
8 Hb_000140_330 0.0920914176 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
9 Hb_032202_110 0.0931694505 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_010738_010 0.0936329166 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_017075_030 0.0938179924 - - helicase, putative [Ricinus communis]
12 Hb_003878_140 0.0938316615 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
13 Hb_000224_060 0.0945671636 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
14 Hb_003058_110 0.0960519603 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
15 Hb_009252_100 0.0985258023 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
16 Hb_031042_070 0.0989107253 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003126_030 0.0991174009 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000342_110 0.0992435351 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
19 Hb_003656_160 0.0997587893 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
20 Hb_000227_250 0.1002095402 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_080 Hb_001486_080 Hb_000406_240 Hb_000406_240 Hb_001486_080--Hb_000406_240 Hb_002301_220 Hb_002301_220 Hb_001486_080--Hb_002301_220 Hb_007982_070 Hb_007982_070 Hb_001486_080--Hb_007982_070 Hb_008554_120 Hb_008554_120 Hb_001486_080--Hb_008554_120 Hb_005883_010 Hb_005883_010 Hb_001486_080--Hb_005883_010 Hb_134951_010 Hb_134951_010 Hb_001486_080--Hb_134951_010 Hb_000406_240--Hb_007982_070 Hb_017075_030 Hb_017075_030 Hb_000406_240--Hb_017075_030 Hb_000406_240--Hb_005883_010 Hb_000140_330 Hb_000140_330 Hb_000406_240--Hb_000140_330 Hb_004635_050 Hb_004635_050 Hb_000406_240--Hb_004635_050 Hb_003656_160 Hb_003656_160 Hb_002301_220--Hb_003656_160 Hb_001541_020 Hb_001541_020 Hb_002301_220--Hb_001541_020 Hb_002301_220--Hb_008554_120 Hb_000032_320 Hb_000032_320 Hb_002301_220--Hb_000032_320 Hb_022408_010 Hb_022408_010 Hb_002301_220--Hb_022408_010 Hb_000300_360 Hb_000300_360 Hb_007982_070--Hb_000300_360 Hb_031042_070 Hb_031042_070 Hb_007982_070--Hb_031042_070 Hb_000270_460 Hb_000270_460 Hb_007982_070--Hb_000270_460 Hb_007558_120 Hb_007558_120 Hb_007982_070--Hb_007558_120 Hb_032202_110 Hb_032202_110 Hb_007982_070--Hb_032202_110 Hb_102129_070 Hb_102129_070 Hb_008554_120--Hb_102129_070 Hb_008554_120--Hb_007982_070 Hb_140049_030 Hb_140049_030 Hb_008554_120--Hb_140049_030 Hb_007229_040 Hb_007229_040 Hb_008554_120--Hb_007229_040 Hb_000771_180 Hb_000771_180 Hb_008554_120--Hb_000771_180 Hb_007943_120 Hb_007943_120 Hb_005883_010--Hb_007943_120 Hb_005188_060 Hb_005188_060 Hb_005883_010--Hb_005188_060 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_005883_010--Hb_000140_330 Hb_005883_010--Hb_007229_040 Hb_001828_200 Hb_001828_200 Hb_134951_010--Hb_001828_200 Hb_001898_230 Hb_001898_230 Hb_134951_010--Hb_001898_230 Hb_002024_040 Hb_002024_040 Hb_134951_010--Hb_002024_040 Hb_002284_280 Hb_002284_280 Hb_134951_010--Hb_002284_280 Hb_001623_140 Hb_001623_140 Hb_134951_010--Hb_001623_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.141 57.288 42.1551 13.8808 59.0472 59.0015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.3972 32.8939 36.9332 29.2523 15.9956

CAGE analysis