Hb_001486_110

Information

Type transcription factor
Description TF Family: ERF
Location Contig1486: 69855-76420
Sequence    

Annotation

kegg
ID mtr:MTR_6g029180
description Ethylene-responsive transcription factor RAP2-11
nr
ID XP_012070434.1
description PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
swissprot
ID Q6J9S1
description Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1
trembl
ID A0A067L5C6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_110 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
2 Hb_131621_010 0.0486566909 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
3 Hb_007765_090 0.0732789423 - - unknown [Glycine max]
4 Hb_043999_010 0.0751469377 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
5 Hb_004021_110 0.0762795736 - - -
6 Hb_001105_060 0.1186764043 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
7 Hb_000809_150 0.1210945841 - - -
8 Hb_000705_310 0.1416313408 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
9 Hb_001631_120 0.142636221 - - unnamed protein product [Vitis vinifera]
10 Hb_000105_090 0.1438782459 - - -
11 Hb_002805_080 0.1456238886 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
12 Hb_000252_230 0.1479209431 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
13 Hb_003384_050 0.1514775619 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000089_230 0.1525538722 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
15 Hb_000290_010 0.1674131025 - - -
16 Hb_002307_060 0.1703541883 - - -
17 Hb_011781_050 0.1835220056 - - -
18 Hb_002540_040 0.2174542437 - - BnaC05g39550D [Brassica napus]
19 Hb_001032_040 0.2176959622 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
20 Hb_003494_250 0.2229241841 - - -

Gene co-expression network

sample Hb_001486_110 Hb_001486_110 Hb_131621_010 Hb_131621_010 Hb_001486_110--Hb_131621_010 Hb_007765_090 Hb_007765_090 Hb_001486_110--Hb_007765_090 Hb_043999_010 Hb_043999_010 Hb_001486_110--Hb_043999_010 Hb_004021_110 Hb_004021_110 Hb_001486_110--Hb_004021_110 Hb_001105_060 Hb_001105_060 Hb_001486_110--Hb_001105_060 Hb_000809_150 Hb_000809_150 Hb_001486_110--Hb_000809_150 Hb_131621_010--Hb_007765_090 Hb_131621_010--Hb_043999_010 Hb_131621_010--Hb_001105_060 Hb_131621_010--Hb_000809_150 Hb_000252_230 Hb_000252_230 Hb_131621_010--Hb_000252_230 Hb_007765_090--Hb_043999_010 Hb_007765_090--Hb_001105_060 Hb_007765_090--Hb_000809_150 Hb_007765_090--Hb_000252_230 Hb_043999_010--Hb_001105_060 Hb_043999_010--Hb_000809_150 Hb_043999_010--Hb_000252_230 Hb_000705_310 Hb_000705_310 Hb_004021_110--Hb_000705_310 Hb_001631_120 Hb_001631_120 Hb_004021_110--Hb_001631_120 Hb_000105_090 Hb_000105_090 Hb_004021_110--Hb_000105_090 Hb_002805_080 Hb_002805_080 Hb_004021_110--Hb_002805_080 Hb_003384_050 Hb_003384_050 Hb_004021_110--Hb_003384_050 Hb_001105_060--Hb_000809_150 Hb_001105_060--Hb_000252_230 Hb_000809_150--Hb_000252_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0326927 0 0 0.0769089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis