Hb_001486_120

Information

Type -
Description -
Location Contig1486: 77343-94882
Sequence    

Annotation

kegg
ID rcu:RCOM_1120720
description importin beta-3, putative
nr
ID XP_012070433.1
description PREDICTED: importin-5-like [Jatropha curcas]
swissprot
ID Q8BKC5
description Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3
trembl
ID A0A067L6I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02709 PE=4 SV=1
Gene Ontology
ID GO:0005618
description importin-5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12231: 78042-94537 , PASA_asmbl_12232: 79179-79460 , PASA_asmbl_12234: 84200-84461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_120 0.0 - - PREDICTED: importin-5-like [Jatropha curcas]
2 Hb_000136_150 0.0652138681 - - hypothetical protein VITISV_038366 [Vitis vinifera]
3 Hb_000134_360 0.0658742296 - - PREDICTED: protein gar2 [Jatropha curcas]
4 Hb_000805_310 0.0752774544 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
5 Hb_000317_440 0.0771302579 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
6 Hb_009421_030 0.0792576177 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
7 Hb_008528_010 0.0823453008 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
8 Hb_002374_150 0.0826015535 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
9 Hb_002918_070 0.0840611532 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
10 Hb_000212_280 0.088757096 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
11 Hb_005000_270 0.0896341186 - - unnamed protein product [Vitis vinifera]
12 Hb_153547_010 0.0908008764 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
13 Hb_000003_790 0.0913812244 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
14 Hb_005295_040 0.0925757627 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
15 Hb_001582_030 0.0932755511 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
16 Hb_117950_020 0.093719425 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
17 Hb_000631_150 0.0944991137 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
18 Hb_000573_040 0.0954517865 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
19 Hb_000291_120 0.0965589521 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
20 Hb_001431_070 0.0967547311 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_120 Hb_001486_120 Hb_000136_150 Hb_000136_150 Hb_001486_120--Hb_000136_150 Hb_000134_360 Hb_000134_360 Hb_001486_120--Hb_000134_360 Hb_000805_310 Hb_000805_310 Hb_001486_120--Hb_000805_310 Hb_000317_440 Hb_000317_440 Hb_001486_120--Hb_000317_440 Hb_009421_030 Hb_009421_030 Hb_001486_120--Hb_009421_030 Hb_008528_010 Hb_008528_010 Hb_001486_120--Hb_008528_010 Hb_000136_150--Hb_000317_440 Hb_016657_020 Hb_016657_020 Hb_000136_150--Hb_016657_020 Hb_001437_100 Hb_001437_100 Hb_000136_150--Hb_001437_100 Hb_002883_010 Hb_002883_010 Hb_000136_150--Hb_002883_010 Hb_000136_150--Hb_000805_310 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_005000_270 Hb_005000_270 Hb_000134_360--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100 Hb_005295_040 Hb_005295_040 Hb_000805_310--Hb_005295_040 Hb_153547_010 Hb_153547_010 Hb_000805_310--Hb_153547_010 Hb_000230_370 Hb_000230_370 Hb_000805_310--Hb_000230_370 Hb_005129_050 Hb_005129_050 Hb_000805_310--Hb_005129_050 Hb_000317_440--Hb_000631_150 Hb_000317_440--Hb_001437_100 Hb_000317_440--Hb_002883_010 Hb_000317_440--Hb_016657_020 Hb_000317_440--Hb_153547_010 Hb_000291_120 Hb_000291_120 Hb_009421_030--Hb_000291_120 Hb_001582_030 Hb_001582_030 Hb_009421_030--Hb_001582_030 Hb_000367_290 Hb_000367_290 Hb_009421_030--Hb_000367_290 Hb_009421_030--Hb_005295_040 Hb_000152_890 Hb_000152_890 Hb_009421_030--Hb_000152_890 Hb_008528_010--Hb_000003_790 Hb_008528_010--Hb_001582_030 Hb_022288_010 Hb_022288_010 Hb_008528_010--Hb_022288_010 Hb_012016_020 Hb_012016_020 Hb_008528_010--Hb_012016_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.1021 40.0016 7.78018 11.2431 116.886 147.978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6191 13.9947 34.1975 30.1682 24.1618

CAGE analysis