Hb_001486_140

Information

Type -
Description -
Location Contig1486: 106622-109523
Sequence    

Annotation

kegg
ID vvi:100265001
description probable glycosyltransferase At5g03795
nr
ID XP_002265438.3
description PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6I3M9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0032g00420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12238: 106927-108214 , PASA_asmbl_12239: 107987-108301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_140 0.0 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
2 Hb_005839_100 0.2284209804 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_001100_030 0.2301611962 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
4 Hb_004102_050 0.2337640494 - - JHL25H03.10 [Jatropha curcas]
5 Hb_147996_010 0.2485974525 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
6 Hb_000836_610 0.2507712921 - - stem-specific protein TSJT1-like [Jatropha curcas]
7 Hb_006054_020 0.2593509645 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003581_080 0.2648235477 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
9 Hb_012052_030 0.2680305519 - - -
10 Hb_011377_010 0.2681894808 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
11 Hb_007527_030 0.2718534985 - - -
12 Hb_007773_030 0.2718879816 - - -
13 Hb_000061_380 0.2739915604 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001584_010 0.2753080109 - - kelch repeat protein, putative [Ricinus communis]
15 Hb_002903_130 0.275370871 - - epoxide hydrolase, putative [Ricinus communis]
16 Hb_001842_060 0.2799269879 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
17 Hb_004286_030 0.2803692483 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
18 Hb_048848_010 0.2814629842 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
19 Hb_000165_120 0.2824803094 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
20 Hb_000000_240 0.282629585 - - PREDICTED: protein LYK5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001486_140 Hb_001486_140 Hb_005839_100 Hb_005839_100 Hb_001486_140--Hb_005839_100 Hb_001100_030 Hb_001100_030 Hb_001486_140--Hb_001100_030 Hb_004102_050 Hb_004102_050 Hb_001486_140--Hb_004102_050 Hb_147996_010 Hb_147996_010 Hb_001486_140--Hb_147996_010 Hb_000836_610 Hb_000836_610 Hb_001486_140--Hb_000836_610 Hb_006054_020 Hb_006054_020 Hb_001486_140--Hb_006054_020 Hb_002783_200 Hb_002783_200 Hb_005839_100--Hb_002783_200 Hb_048848_010 Hb_048848_010 Hb_005839_100--Hb_048848_010 Hb_007785_010 Hb_007785_010 Hb_005839_100--Hb_007785_010 Hb_003384_070 Hb_003384_070 Hb_005839_100--Hb_003384_070 Hb_001091_030 Hb_001091_030 Hb_005839_100--Hb_001091_030 Hb_000000_240 Hb_000000_240 Hb_001100_030--Hb_000000_240 Hb_000051_030 Hb_000051_030 Hb_001100_030--Hb_000051_030 Hb_001100_030--Hb_000836_610 Hb_068492_010 Hb_068492_010 Hb_001100_030--Hb_068492_010 Hb_001842_060 Hb_001842_060 Hb_001100_030--Hb_001842_060 Hb_004286_030 Hb_004286_030 Hb_001100_030--Hb_004286_030 Hb_004102_050--Hb_006054_020 Hb_003025_010 Hb_003025_010 Hb_004102_050--Hb_003025_010 Hb_007527_030 Hb_007527_030 Hb_004102_050--Hb_007527_030 Hb_000191_160 Hb_000191_160 Hb_004102_050--Hb_000191_160 Hb_011377_010 Hb_011377_010 Hb_004102_050--Hb_011377_010 Hb_000610_020 Hb_000610_020 Hb_147996_010--Hb_000610_020 Hb_029393_020 Hb_029393_020 Hb_147996_010--Hb_029393_020 Hb_010921_090 Hb_010921_090 Hb_147996_010--Hb_010921_090 Hb_002367_120 Hb_002367_120 Hb_147996_010--Hb_002367_120 Hb_006615_040 Hb_006615_040 Hb_147996_010--Hb_006615_040 Hb_002641_050 Hb_002641_050 Hb_000836_610--Hb_002641_050 Hb_000836_610--Hb_068492_010 Hb_000836_610--Hb_001842_060 Hb_042083_060 Hb_042083_060 Hb_000836_610--Hb_042083_060 Hb_000836_610--Hb_000051_030 Hb_001195_220 Hb_001195_220 Hb_000836_610--Hb_001195_220 Hb_006054_020--Hb_003025_010 Hb_001921_020 Hb_001921_020 Hb_006054_020--Hb_001921_020 Hb_006054_020--Hb_000191_160 Hb_046417_010 Hb_046417_010 Hb_006054_020--Hb_046417_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222479 0.714963 0.597921 0.112178 0.108859 0.346016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0714517 0 0 0.95519 0

CAGE analysis