Hb_001486_170

Information

Type -
Description -
Location Contig1486: 123856-128488
Sequence    

Annotation

kegg
ID rcu:RCOM_1322390
description syntaxin, putative
nr
ID XP_012070427.1
description PREDICTED: syntaxin-132 [Jatropha curcas]
swissprot
ID Q9SRV7
description Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1
trembl
ID A0A067L5B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02705 PE=3 SV=1
Gene Ontology
ID GO:0005622
description syntaxin-132

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12245: 123973-124136 , PASA_asmbl_12246: 128424-129532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_170 0.0 - - PREDICTED: syntaxin-132 [Jatropha curcas]
2 Hb_005463_130 0.0696645374 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
3 Hb_002836_140 0.0727420733 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
4 Hb_013726_080 0.0830608218 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
5 Hb_002054_050 0.0839094888 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
6 Hb_000915_080 0.0929184754 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
7 Hb_008556_030 0.0949596497 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
8 Hb_001501_080 0.0960818683 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
9 Hb_000751_030 0.0961489468 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
10 Hb_002928_010 0.0964567686 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
11 Hb_000414_050 0.0966215612 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
12 Hb_027472_120 0.0968775717 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_001418_040 0.1010044988 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
14 Hb_000138_130 0.1066638936 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
15 Hb_007951_040 0.106932345 - - signal peptidase family protein [Populus trichocarpa]
16 Hb_008921_010 0.1077671284 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
17 Hb_002042_030 0.10811784 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
18 Hb_000287_050 0.1082776058 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
19 Hb_001269_230 0.1090228937 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
20 Hb_039605_010 0.110666631 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_170 Hb_001486_170 Hb_005463_130 Hb_005463_130 Hb_001486_170--Hb_005463_130 Hb_002836_140 Hb_002836_140 Hb_001486_170--Hb_002836_140 Hb_013726_080 Hb_013726_080 Hb_001486_170--Hb_013726_080 Hb_002054_050 Hb_002054_050 Hb_001486_170--Hb_002054_050 Hb_000915_080 Hb_000915_080 Hb_001486_170--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_001486_170--Hb_008556_030 Hb_005463_130--Hb_002054_050 Hb_001501_080 Hb_001501_080 Hb_005463_130--Hb_001501_080 Hb_005463_130--Hb_013726_080 Hb_000751_030 Hb_000751_030 Hb_005463_130--Hb_000751_030 Hb_008921_010 Hb_008921_010 Hb_005463_130--Hb_008921_010 Hb_007951_040 Hb_007951_040 Hb_002836_140--Hb_007951_040 Hb_002836_140--Hb_000915_080 Hb_002836_140--Hb_008556_030 Hb_000414_050 Hb_000414_050 Hb_002836_140--Hb_000414_050 Hb_002783_170 Hb_002783_170 Hb_002836_140--Hb_002783_170 Hb_002539_110 Hb_002539_110 Hb_013726_080--Hb_002539_110 Hb_013726_080--Hb_000915_080 Hb_013726_080--Hb_002054_050 Hb_003430_090 Hb_003430_090 Hb_013726_080--Hb_003430_090 Hb_002054_050--Hb_008921_010 Hb_000959_230 Hb_000959_230 Hb_002054_050--Hb_000959_230 Hb_000317_510 Hb_000317_510 Hb_002054_050--Hb_000317_510 Hb_001005_030 Hb_001005_030 Hb_002054_050--Hb_001005_030 Hb_002054_050--Hb_001501_080 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_000101_380 Hb_000101_380 Hb_000915_080--Hb_000101_380 Hb_002042_030 Hb_002042_030 Hb_000915_080--Hb_002042_030 Hb_000915_080--Hb_002783_170 Hb_000915_080--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_008556_030--Hb_001418_040 Hb_000797_050 Hb_000797_050 Hb_008556_030--Hb_000797_050 Hb_002942_050 Hb_002942_050 Hb_008556_030--Hb_002942_050 Hb_000031_280 Hb_000031_280 Hb_008556_030--Hb_000031_280 Hb_002093_030 Hb_002093_030 Hb_008556_030--Hb_002093_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.704 5.06351 19.1883 10.5103 14.4523 12.461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.53051 5.70198 6.32406 5.50403 7.03511

CAGE analysis