Hb_001486_180

Information

Type -
Description -
Location Contig1486: 131340-133653
Sequence    

Annotation

kegg
ID cit:102626892
description DNA ligase 1-like
nr
ID KJB44591.1
description hypothetical protein B456_007G260200 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2SRD8
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G260200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12247: 131212-133039 , PASA_asmbl_12249: 133487-133861
cDNA
(Sanger)
(ID:Location)		 006_N11.ab1: 131212-132743 , 019_G14.ab1: 132658-133002 , 020_L02.ab1: 132662-133039 , 053_O18.ab1: 132559-132980

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_180 0.0 - - hypothetical protein B456_007G260200 [Gossypium raimondii]
2 Hb_003291_010 0.0748213063 - - ATP-dependent protease La, putative [Ricinus communis]
3 Hb_000977_110 0.0753570586 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
4 Hb_000999_050 0.0853109873 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
5 Hb_006615_020 0.0936857967 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
6 Hb_004607_050 0.0940986162 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_003688_150 0.0957447119 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
8 Hb_020805_130 0.0973312065 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_001507_040 0.0973954284 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000041_110 0.0985474466 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
11 Hb_000327_180 0.1002895865 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
12 Hb_001195_200 0.1007320357 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
13 Hb_002518_260 0.1028042054 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
14 Hb_002481_080 0.1029096611 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
15 Hb_001902_140 0.1040747765 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
16 Hb_012035_050 0.1042861769 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
17 Hb_001352_020 0.1059552232 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
18 Hb_029510_050 0.1062158049 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
19 Hb_006420_080 0.1070983482 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_009486_140 0.1071994656 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_180 Hb_001486_180 Hb_003291_010 Hb_003291_010 Hb_001486_180--Hb_003291_010 Hb_000977_110 Hb_000977_110 Hb_001486_180--Hb_000977_110 Hb_000999_050 Hb_000999_050 Hb_001486_180--Hb_000999_050 Hb_006615_020 Hb_006615_020 Hb_001486_180--Hb_006615_020 Hb_004607_050 Hb_004607_050 Hb_001486_180--Hb_004607_050 Hb_003688_150 Hb_003688_150 Hb_001486_180--Hb_003688_150 Hb_003142_020 Hb_003142_020 Hb_003291_010--Hb_003142_020 Hb_003291_010--Hb_000977_110 Hb_001318_270 Hb_001318_270 Hb_003291_010--Hb_001318_270 Hb_000227_120 Hb_000227_120 Hb_003291_010--Hb_000227_120 Hb_003291_010--Hb_003688_150 Hb_000976_300 Hb_000976_300 Hb_000977_110--Hb_000976_300 Hb_000977_110--Hb_000999_050 Hb_000977_110--Hb_004607_050 Hb_004837_130 Hb_004837_130 Hb_000977_110--Hb_004837_130 Hb_000999_050--Hb_004607_050 Hb_004994_220 Hb_004994_220 Hb_000999_050--Hb_004994_220 Hb_000999_050--Hb_004837_130 Hb_002740_180 Hb_002740_180 Hb_000999_050--Hb_002740_180 Hb_006938_080 Hb_006938_080 Hb_000999_050--Hb_006938_080 Hb_001009_170 Hb_001009_170 Hb_000999_050--Hb_001009_170 Hb_001902_140 Hb_001902_140 Hb_006615_020--Hb_001902_140 Hb_000185_030 Hb_000185_030 Hb_006615_020--Hb_000185_030 Hb_000015_040 Hb_000015_040 Hb_006615_020--Hb_000015_040 Hb_000840_250 Hb_000840_250 Hb_006615_020--Hb_000840_250 Hb_001507_040 Hb_001507_040 Hb_006615_020--Hb_001507_040 Hb_001633_210 Hb_001633_210 Hb_006615_020--Hb_001633_210 Hb_000866_170 Hb_000866_170 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_004607_050--Hb_006938_080 Hb_000783_020 Hb_000783_020 Hb_003688_150--Hb_000783_020 Hb_000120_460 Hb_000120_460 Hb_003688_150--Hb_000120_460 Hb_001619_070 Hb_001619_070 Hb_003688_150--Hb_001619_070 Hb_003688_150--Hb_001318_270 Hb_103118_010 Hb_103118_010 Hb_003688_150--Hb_103118_010 Hb_086639_040 Hb_086639_040 Hb_003688_150--Hb_086639_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.9981 43.543 18.7991 44.9631 45.4751 32.3766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.1393 56.0085 89.4169 69.3313 59.2529

CAGE analysis