Hb_001486_190

Information

Type -
Description -
Location Contig1486: 134676-138777
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05230g
description POPTRDRAFT_823696; beta-D-glucan exohydrolase family protein
nr
ID KDP39682.1
description hypothetical protein JCGZ_02702 [Jatropha curcas]
swissprot
ID A7LXU3
description Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02659 PE=1 SV=1
trembl
ID A0A067KU67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02702 PE=4 SV=1
Gene Ontology
ID GO:0008422
description lysosomal beta glucosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12250: 134676-137149 , PASA_asmbl_12251: 137339-137932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_190 0.0 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
2 Hb_000984_310 0.0962954188 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
3 Hb_000748_030 0.1262094648 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000853_200 0.1303463453 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
5 Hb_005183_170 0.1325182313 - - PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Jatropha curcas]
6 Hb_146051_010 0.1345934523 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_000172_100 0.1351955424 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
8 Hb_000152_320 0.1383807846 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000505_150 0.1393020008 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
10 Hb_002344_100 0.1394003615 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
11 Hb_001051_070 0.1418212878 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
12 Hb_019280_020 0.1422114233 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
13 Hb_001481_150 0.1441145021 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
14 Hb_000023_300 0.1441847043 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
15 Hb_012651_010 0.144447867 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
16 Hb_000679_100 0.1449511206 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
17 Hb_126757_010 0.1471250059 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_004137_020 0.1485155635 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Jatropha curcas]
19 Hb_007409_040 0.1489553916 - - actin family protein [Populus trichocarpa]
20 Hb_002781_030 0.1496592489 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001486_190 Hb_001486_190 Hb_000984_310 Hb_000984_310 Hb_001486_190--Hb_000984_310 Hb_000748_030 Hb_000748_030 Hb_001486_190--Hb_000748_030 Hb_000853_200 Hb_000853_200 Hb_001486_190--Hb_000853_200 Hb_005183_170 Hb_005183_170 Hb_001486_190--Hb_005183_170 Hb_146051_010 Hb_146051_010 Hb_001486_190--Hb_146051_010 Hb_000172_100 Hb_000172_100 Hb_001486_190--Hb_000172_100 Hb_001051_070 Hb_001051_070 Hb_000984_310--Hb_001051_070 Hb_012651_010 Hb_012651_010 Hb_000984_310--Hb_012651_010 Hb_000836_280 Hb_000836_280 Hb_000984_310--Hb_000836_280 Hb_000679_100 Hb_000679_100 Hb_000984_310--Hb_000679_100 Hb_000140_350 Hb_000140_350 Hb_000984_310--Hb_000140_350 Hb_000748_030--Hb_000853_200 Hb_000477_100 Hb_000477_100 Hb_000748_030--Hb_000477_100 Hb_001454_230 Hb_001454_230 Hb_000748_030--Hb_001454_230 Hb_004137_020 Hb_004137_020 Hb_000748_030--Hb_004137_020 Hb_003305_040 Hb_003305_040 Hb_000748_030--Hb_003305_040 Hb_003529_030 Hb_003529_030 Hb_000748_030--Hb_003529_030 Hb_000853_200--Hb_000477_100 Hb_000505_150 Hb_000505_150 Hb_000853_200--Hb_000505_150 Hb_008748_030 Hb_008748_030 Hb_000853_200--Hb_008748_030 Hb_000012_310 Hb_000012_310 Hb_000853_200--Hb_000012_310 Hb_007416_210 Hb_007416_210 Hb_000853_200--Hb_007416_210 Hb_183610_010 Hb_183610_010 Hb_005183_170--Hb_183610_010 Hb_005183_170--Hb_000984_310 Hb_003617_020 Hb_003617_020 Hb_005183_170--Hb_003617_020 Hb_004117_120 Hb_004117_120 Hb_005183_170--Hb_004117_120 Hb_011671_080 Hb_011671_080 Hb_005183_170--Hb_011671_080 Hb_007409_040 Hb_007409_040 Hb_146051_010--Hb_007409_040 Hb_001157_200 Hb_001157_200 Hb_146051_010--Hb_001157_200 Hb_032969_020 Hb_032969_020 Hb_146051_010--Hb_032969_020 Hb_146051_010--Hb_000172_100 Hb_003544_030 Hb_003544_030 Hb_146051_010--Hb_003544_030 Hb_006452_120 Hb_006452_120 Hb_146051_010--Hb_006452_120 Hb_004725_050 Hb_004725_050 Hb_000172_100--Hb_004725_050 Hb_000291_150 Hb_000291_150 Hb_000172_100--Hb_000291_150 Hb_066920_030 Hb_066920_030 Hb_000172_100--Hb_066920_030 Hb_003607_130 Hb_003607_130 Hb_000172_100--Hb_003607_130 Hb_000172_100--Hb_003617_020 Hb_000072_120 Hb_000072_120 Hb_000172_100--Hb_000072_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83237 5.31751 2.43191 13.8458 2.44551 1.4976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83105 2.49274 7.04101 4.62083 4.22242

CAGE analysis