Hb_001486_260

Information

Type -
Description -
Location Contig1486: 195082-200025
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05350g
description POPTRDRAFT_573950; RNA recognition motif-containing family protein
nr
ID XP_012070421.1
description PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
swissprot
ID Q9LFD5
description Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1
trembl
ID A0A067L6H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02699 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna recognition motif-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12262: 195101-199955 , PASA_asmbl_12263: 196672-199955
cDNA
(Sanger)
(ID:Location)		 012_N04.ab1: 196222-199955 , 022_N22.ab1: 197291-199953 , 032_H06.ab1: 197045-199955 , 033_B02.ab1: 196224-199954 , 034_F13.ab1: 195101-196164 , 034_I07.ab1: 196211-199954

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_260 0.0 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
2 Hb_004102_190 0.0873195357 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
3 Hb_000389_060 0.0891894613 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
4 Hb_000085_200 0.1091134489 - - ATP synthase subunit H protein [Hevea brasiliensis]
5 Hb_000408_050 0.1202886857 - - hypothetical protein POPTR_0018s11350g [Populus trichocarpa]
6 Hb_092272_020 0.1228445842 - - hypothetical protein EUGRSUZ_F00278 [Eucalyptus grandis]
7 Hb_002875_080 0.1279037248 - - protein with unknown function [Ricinus communis]
8 Hb_001104_120 0.1345557842 - - -
9 Hb_000061_480 0.1363923683 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
10 Hb_001279_070 0.1372400305 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
11 Hb_011609_180 0.1375847937 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
12 Hb_116420_030 0.1395691981 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
13 Hb_000483_160 0.1401592932 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
14 Hb_000526_150 0.1402804107 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
15 Hb_001019_090 0.1433430588 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
16 Hb_005611_010 0.1438428661 - - PREDICTED: protein prune homolog [Jatropha curcas]
17 Hb_002477_240 0.1452749755 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
18 Hb_000316_110 0.145836414 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
19 Hb_000723_090 0.1458810936 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010810_020 0.1474240881 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_260 Hb_001486_260 Hb_004102_190 Hb_004102_190 Hb_001486_260--Hb_004102_190 Hb_000389_060 Hb_000389_060 Hb_001486_260--Hb_000389_060 Hb_000085_200 Hb_000085_200 Hb_001486_260--Hb_000085_200 Hb_000408_050 Hb_000408_050 Hb_001486_260--Hb_000408_050 Hb_092272_020 Hb_092272_020 Hb_001486_260--Hb_092272_020 Hb_002875_080 Hb_002875_080 Hb_001486_260--Hb_002875_080 Hb_004102_190--Hb_000389_060 Hb_001019_090 Hb_001019_090 Hb_004102_190--Hb_001019_090 Hb_001279_070 Hb_001279_070 Hb_004102_190--Hb_001279_070 Hb_000316_110 Hb_000316_110 Hb_004102_190--Hb_000316_110 Hb_000189_530 Hb_000189_530 Hb_004102_190--Hb_000189_530 Hb_000389_060--Hb_002875_080 Hb_001104_120 Hb_001104_120 Hb_000389_060--Hb_001104_120 Hb_000389_060--Hb_092272_020 Hb_000061_480 Hb_000061_480 Hb_000389_060--Hb_000061_480 Hb_011609_180 Hb_011609_180 Hb_000085_200--Hb_011609_180 Hb_000634_050 Hb_000634_050 Hb_000085_200--Hb_000634_050 Hb_002447_030 Hb_002447_030 Hb_000085_200--Hb_002447_030 Hb_002529_100 Hb_002529_100 Hb_000085_200--Hb_002529_100 Hb_000008_320 Hb_000008_320 Hb_000085_200--Hb_000008_320 Hb_000417_110 Hb_000417_110 Hb_000085_200--Hb_000417_110 Hb_005463_060 Hb_005463_060 Hb_000408_050--Hb_005463_060 Hb_001158_150 Hb_001158_150 Hb_000408_050--Hb_001158_150 Hb_000484_020 Hb_000484_020 Hb_000408_050--Hb_000484_020 Hb_000408_050--Hb_004102_190 Hb_003226_220 Hb_003226_220 Hb_000408_050--Hb_003226_220 Hb_002660_160 Hb_002660_160 Hb_092272_020--Hb_002660_160 Hb_007747_130 Hb_007747_130 Hb_092272_020--Hb_007747_130 Hb_004410_010 Hb_004410_010 Hb_092272_020--Hb_004410_010 Hb_004724_040 Hb_004724_040 Hb_092272_020--Hb_004724_040 Hb_001008_060 Hb_001008_060 Hb_002875_080--Hb_001008_060 Hb_000001_050 Hb_000001_050 Hb_002875_080--Hb_000001_050 Hb_009773_020 Hb_009773_020 Hb_002875_080--Hb_009773_020 Hb_010931_090 Hb_010931_090 Hb_002875_080--Hb_010931_090 Hb_029866_040 Hb_029866_040 Hb_002875_080--Hb_029866_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
396.33 23.9842 41.5557 236.073 324.033 331.662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
470.078 730.775 227.975 45.4229 18.9495

CAGE analysis